Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g04339 ATGGTTGCTAACACCAGGTTCATAACATTGCAGAAATTACCAATAACGTTCACTGAAAAATATGGTTCTGGCCTATCAAACTCATTGTATCTTAACCCTCCAGATGATATTGAATGGAGAGTAGATTGGACTAATCATGATGGTGAAATTTTGTTTAAAAAGGGTTGGAAAGAGTTTGTTGCATATTACTCTCTTGATCATGGCTATTTGTTATGGTTTAAGTATAATATTAGAACTTCTCACATTAAAGTACACATATTTGACATGAGTTGCCTCCAAATAGAGTATCCTGCCAATGATCAAATCAAAGAGCAGCTGCCACGCAGGGGTCAGCAGCAGCCGGTGAAAAGGCCAGAAGAACCAAAAACTAGAGATGTGGATAGCAGTTCTAACACCCAAAACATGAGACTTAACCAGGGACGACAGAAGAAAAGATTGTATGAACAATTGCCAAGAGATGTCCAGGGCCAACTGAGAAAAAAACTGAGAGCACTAGTGTCATCTGCTTCTAAAGGTAGACAGTTGAAAAATGACACACAAATCAGGGATTTGGAAAGAAGCCTCAGTTTGCACAATATTAAATCCAAAGAAAAAAACCATGAGATGCCAGTCTCTGTCAATCAAGATTCTAATGGCAAAAGGAATAGAGGAAAAGATTCTTTATCTTCTGTTAGGCCCTGTCCTACAAGACCTGAATCTCTGAAAGAAGCTAAGAAGTTTAAGTGGGAAAAGCCCTCTTTCATCATCAAGATAACGCAACGGTCACAATCGAGAGCACCATGTTACTTTCCAACTAAATTCTTCAGAAAGTATTTTGAAAATAACCCCCAAAATGCAAATATAAGATTTGGAAAGAAGTTGTTCCCTGCTAAGTTGATTTGTAGGCCATCATCATGTGATGCCTTTATCTCTGCTGGTTGGAACCTTTTTGCTCGAGCCAGTAAATTACAAGCCGGAGATGTTTGTTTGTTTAAGCTCATCAATAGAAAATATCCGGTGCTTGATGTTTAG 1011 0.3838 MVANTRFITLQKLPITFTEKYGSGLSNSLYLNPPDDIEWRVDWTNHDGEILFKKGWKEFVAYYSLDHGYLLWFKYNIRTSHIKVHIFDMSCLQIEYPANDQIKEQLPRRGQQQPVKRPEEPKTRDVDSSSNTQNMRLNQGRQKKRLYEQLPRDVQGQLRKKLRALVSSASKGRQLKNDTQIRDLERSLSLHNIKSKEKNHEMPVSVNQDSNGKRNRGKDSLSSVRPCPTRPESLKEAKKFKWEKPSFIIKITQRSQSRAPCYFPTKFFRKYFENNPQNANIRFGKKLFPAKLICRPSSCDAFISAGWNLFARASKLQAGDVCLFKLINRKYPVLDV 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g04339 336 Pfam B3 DNA binding domain 251 329 IPR003340 GO:0003677
Adu03g04339 336 Pfam B3 DNA binding domain 12 88 IPR003340 GO:0003677
Adu03g04339 336 Gene3D - 229 336 IPR015300 -
Adu03g04339 336 Gene3D - 3 91 IPR015300 -
Adu03g04339 336 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 12 334 - -
Adu03g04339 336 MobiDBLite consensus disorder prediction 192 231 - -
Adu03g04339 336 SUPERFAMILY DNA-binding pseudobarrel domain 241 329 IPR015300 -
Adu03g04339 336 SMART B3_2 7 90 IPR003340 GO:0003677
Adu03g04339 336 SMART B3_2 247 335 IPR003340 GO:0003677
Adu03g04339 336 MobiDBLite consensus disorder prediction 104 153 - -
Adu03g04339 336 CDD B3_DNA 245 330 IPR003340 GO:0003677
Adu03g04339 336 SUPERFAMILY DNA-binding pseudobarrel domain 12 97 IPR015300 -
Adu03g04339 336 ProSiteProfiles B3 DNA-binding domain profile. 1 90 IPR003340 GO:0003677
Adu03g04339 336 CDD B3_DNA 13 88 IPR003340 GO:0003677
Adu03g04339 336 PANTHER B3 DOMAIN-CONTAINING 12 334 - -
Adu03g04339 336 ProSiteProfiles B3 DNA-binding domain profile. 302 336 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g04339 Adu-Chr3 132318617 132319893 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g04339 12 336 B3 DNA Binding Superfamily AT3G18990 24.465 3.89e-17 79.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Adu03g04339 B3 9.4e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g04339 - - adu:107471893 515.383