Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g04338 ATGGCTTCCTCTAGTTTCCAAAGAAACAAGCATTCTCCTTCTTCTGTGATCTGTTTCTTCAAGATTGTTCTCAGACAAAGCCTTGAAGATGGAAACTCAGCATTCCAGCAGTCTTCTTCAGAAAACACTTTTAAGAAAACAAAGTATGTAAATCTACGCAACAGAGAGAAGCAGTGGCCTGTAACATTGATCTATTATCCGACTAGGAAAATTGCCATTTTGTCCGCCGGTTCGGTCTCGTTCGCTCGAGAAAATAACTTGAAAGCCGGAGACATTTGTATCTTTGAGCTTGTTTACAGAGAAGGTGCAGAACTTGATGCTCATATTTTTCTAAGGGATGCTTAA 345 0.4 MASSSFQRNKHSPSSVICFFKIVLRQSLEDGNSAFQQSSSENTFKKTKYVNLRNREKQWPVTLIYYPTRKIAILSAGSVSFARENNLKAGDICIFELVYREGAELDAHIFLRDA 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g04338 114 CDD B3_DNA 44 110 IPR003340 GO:0003677
Adu03g04338 114 Pfam B3 DNA binding domain 41 110 IPR003340 GO:0003677
Adu03g04338 114 Gene3D - 2 113 IPR015300 -
Adu03g04338 114 ProSiteProfiles B3 DNA-binding domain profile. 50 113 IPR003340 GO:0003677
Adu03g04338 114 SUPERFAMILY DNA-binding pseudobarrel domain 41 110 IPR015300 -
Adu03g04338 114 SMART B3_2 19 113 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g04338 Adu-Chr3 132313959 132316975 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g04338 19 98 B3 DNA Binding Superfamily AT3G18990 37.349 7.65e-09 50.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Adu03g04338 B3 1.1e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g04338 - - aip:107622451 75.485