Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g04311 ATGTCTAGGAGAAAGGTTAGAGAGCCCAAGGAAGAAACTGTCACTCTTGGCCCTGCTGTTAGAGAGGGTGAACATGTTTTTGGTGTGGCTCGCATCTTTGCATCATTTAATGACACCTTTATTCATGTGACTGATTTGTCTGGAAGGGAAACCCTTGTCCGCATCACCGGTGGAATGAAGGTTAAAGCTGACAGAGATGAGTCATCCCCATATGCTGCTATGCTTGCAGCACAAGATGTTGCTGCTAGATGCAAGGAGCTGGGAATAACTGCCCTTCATATCAAGCTCCGAGCCACTGGTGGAAACAAGACAAAAACACCTGGCCCTGGTGCTCAGTCTGCCCTCCGTGCCCTGGCTCGGTCTGGAATGAAAATTGGCCGTATAGAGGATGTGACCCCGATTCCTTCAGATAGCACTCGCAGAAAGAGTGGTAGAAGGGTTCACTTCCTCTTCGTCGGCGGCGAGGGCTTCGTCTTCATCCACCGCCCGCCACCACATCAGCACTCACCTACGTCCAATTCCCACGCTCCGCCGCGATTCTTCCTGCTGCTGGCAAAAGGGGCATCAACAAGCACAAGAAAGAGGAAAATGTTCTTCCATATAGTTTTGGAGCGGAACATGCAGCTGCATCCCCGTTACTTTGGTCGTAACCTCCGCGACAATCTTGTTTCCAAGCTCATGAAAGATGTTGAAGGCACTTGCAGTGGTCGGCATGGCTTTGTGGTGGCTGTTACTGGGATTGAAAACATAGGCAAGGGTTTGATTCGGGATGGTACAGGATTTGTCACATTCCCTGTTAAGTACCAATGTGTTGTTTTTAGGCCATTTAAAGGGGAGATCTTAGAAGCAGTTGTTACCATGGTCAACAAGATGGGATTCTTTGCCGAAGCTGGACCCGTGCAAATTTTTGTTTCAAATCATTTGATTCCTGATGATATGGAGTTCCAGTCTGGGGATATGCCAAATTATACTACTTCAGATGGTTCTGTAAAAATTCAAAAAGATAGTGAAGTGAGATTGAAGATTATGGGAACTCGGGTGGATGCTACCGAAATTTTCTGCATTGGTACCATAAAAGATGATTTCTTGGGTGTGATCAATGATCCTGCGACAGCTTAA 1119 0.471 MSRRKVREPKEETVTLGPAVREGEHVFGVARIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVAARCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDSTRRKSGRRVHFLFVGGEGFVFIHRPPPHQHSPTSNSHAPPRFFLLLAKGASTSTRKRKMFFHIVLERNMQLHPRYFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAVTGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDMPNYTTSDGSVKIQKDSEVRLKIMGTRVDATEIFCIGTIKDDFLGVINDPATA 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g04311 372 CDD RNAP_II_Rpb7_N 198 277 - -
Adu03g04311 372 SUPERFAMILY N-terminal, heterodimerisation domain of RBP7 (RpoE) 197 274 IPR036898 -
Adu03g04311 372 Pfam SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 204 260 IPR005576 GO:0006351
Adu03g04311 372 Gene3D - 196 276 IPR036898 -
Adu03g04311 372 Gene3D Ribosomal protein S11 1 148 IPR036967 GO:0003735|GO:0005840|GO:0006412
Adu03g04311 372 SUPERFAMILY Nucleic acid-binding proteins 275 365 IPR012340 -
Adu03g04311 372 ProSitePatterns Ribosomal protein S11 signature. 115 137 IPR018102 -
Adu03g04311 372 Gene3D - 277 367 IPR012340 -
Adu03g04311 372 Pfam Ribosomal protein S11 28 146 IPR001971 GO:0003735|GO:0005840|GO:0006412
Adu03g04311 372 PANTHER BNAA10G12180D PROTEIN 186 372 - -
Adu03g04311 372 PANTHER DNA-DIRECTED RNA POLYMERASE II, III 186 372 IPR045113 GO:0006352
Adu03g04311 372 Hamap 30S ribosomal protein S11 [rpsK]. 3 147 IPR001971 GO:0003735|GO:0005840|GO:0006412
Adu03g04311 372 Pfam S1 RNA binding domain 274 352 IPR003029 GO:0003676
Adu03g04311 372 SUPERFAMILY Translational machinery components 24 147 - -
Adu03g04311 372 CDD S1_RNAPII_Rpb7 277 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g04311 Adu-Chr3 132095196 132101678 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g04311 1 139 Cytoplasmic Ribosomal Protein Gene Family AT3G11510 91.367 2.59e-88 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g04311 K03015 - gmx:547985 355.525