LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Adu03g04227	ATGGTGATGCTAAACCCATCACAAAACCCTGGCTGCCTCCAGACTTCAACTTTTCTTCGTTGTTGCAAATTTGTTTTCTCTCACTCTCACTCTCTGCCTCGCTCATCGCTACGAATGTCAGACGTGGAAGAATATCGCTGCTTCATTGGTGGCCTTGCATGGTCAACATCTGATAGAAAGTTAAAGGATACATTTGAAAAGTTTGGCAAGCTTGTTGAAGCAAAGGTGGTTGTTGACAAATTCTCTGGGCGCTCTCGTGGTTTTGGATTTGTCACATTTGATGAAAAGAAAGCAATGGAAGATGCTATTGATGCTATGAATGGCATGGATTTAGATGGGCGAACTATCACTGTAGATAAAGCTCAGCCTCAACAAGGATCGGGTAGAGATGATGGTGACCGCCACCGTGATCGTGGTCGAGATCGTGACCGTGATCGCGATCGTAACAGAGATTATGGAGGCGGTCGAGGATCTAATGGTGGTGAATGCTTTAAGTGTGGTAAACCTGGTCATTTTGCTAGGGAGTGCCCTAGTGAAGGGGGAAGAGGAGGAAGGTATGGTGGCAGGGAAGGTGGTAGACATGGTGGAAGTGGTTATGGTCCTGATAGAAATGCAGATCGTTCTTCCGGCGGACGCAGCAGGGATGCTGGCAGGGATGGAGATTCAGGAAATGATCGATACTATCGTGATCGTGCTGGACCATATGAACGACGAGGATCAGGAGTAGTCAAGCGGGATCTTTGGCTAAATGTGGTCTTTTTGGATTCATCATTGGGATCCTTTGTTGCTAATGGGATAGTGCATGGGTTTTTTAAACTAAAATTCTTTTCAGCTGCAACAGGCCATCAGCAATTGAACCAATATGCTATATGCATGACCCTTGTTTTCTTCATGGGGCACTGA	903	0.4607	MVMLNPSQNPGCLQTSTFLRCCKFVFSHSHSLPRSSLRMSDVEEYRCFIGGLAWSTSDRKLKDTFEKFGKLVEAKVVVDKFSGRSRGFGFVTFDEKKAMEDAIDAMNGMDLDGRTITVDKAQPQQGSGRDDGDRHRDRGRDRDRDRDRNRDYGGGRGSNGGECFKCGKPGHFARECPSEGGRGGRYGGREGGRHGGSGYGPDRNADRSSGGRSRDAGRDGDSGNDRYYRDRAGPYERRGSGVVKRDLWLNVVFLDSSLGSFVANGIVHGFFKLKFFSAATGHQQLNQYAICMTLVFFMGH	300

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Adu03g04227	300	MobiDBLite	consensus disorder prediction	126	153	-	-
	Adu03g04227	300	Pfam	Zinc knuckle	162	178	IPR001878	GO:0003676\|GO:0008270
	Adu03g04227	300	PANTHER	GLYCINE-RICH RNA-BINDING PROTEIN RZ1A	39	204	-	-
	Adu03g04227	300	SMART	c2hcfinal6	162	178	IPR001878	GO:0003676\|GO:0008270
	Adu03g04227	300	MobiDBLite	consensus disorder prediction	207	234	-	-
	Adu03g04227	300	SUPERFAMILY	RNA-binding domain, RBD	30	154	IPR035979	GO:0003676
	Adu03g04227	300	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	45	123	IPR000504	GO:0003723
	Adu03g04227	300	Gene3D	-	31	158	IPR012677	-
	Adu03g04227	300	SMART	rrm1_1	46	119	IPR000504	GO:0003723
	Adu03g04227	300	SUPERFAMILY	Retrovirus zinc finger-like domains	145	182	IPR036875	GO:0003676\|GO:0008270
	Adu03g04227	300	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	48	117	IPR000504	GO:0003723
	Adu03g04227	300	Gene3D	-	159	214	-	-
	Adu03g04227	300	ProSiteProfiles	Zinc finger CCHC-type profile.	163	178	IPR001878	GO:0003676\|GO:0008270
	Adu03g04227	300	PANTHER	TRANSFORMER-2-RELATED	39	204	-	-
	Adu03g04227	300	MobiDBLite	consensus disorder prediction	114	234	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Adu03g04227	Adu-Chr3	131293786	131297442	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Adu03g04227	47	122	Eukaryotic Initiation Factors Gene Family	AT1G49760	35.526	1.49e-06	47.8

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Adu03g04227	-		-	gmx:100815224	270.011