Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g04101 ATGCAGAGCCAACTTGTGTGTAATGGGTGTAGGAGCATTTTGCTTTATCCTAGAGGGGCAACCAATGTGTGTTGTGCATTGTGCAACACAATTACCTCTGTTCCTCCACCTGGAATGGAGATGTCTCAACTTGTTTGCGGGGGATGTAGGACACTGCTAATGTACACACGTGGAGCTACAAGCGTGAGATGTTCCTGCTGTCAAACTGTAAACCTTGCACCACCAGCACCCAGTCAAGTCGCCCACGTGCATTGTGGGAACTGCCGGACAACACTCATGTATCCTTACGGAGCTCCTTCTGTCAAATGTGCACTTTGCCAATATGTTACCAATGTCAATATGAACAATGGAAGGCTTCCAATCCCAGTCCATAGACCTAATGGAACAACCAACTATGGGACAGTACCCTCTACTTCAACATCGATGCCCCAATCTCAGACCCAGACCGTTGTGATAGAGAATCCCATGACTGTTGATTCAAATGGAAAATTGGTTAGCAATGTTGTTGTTGGGTACCGCCACGGCCACCTTCCTTCACCACAACCTCCGGCGACAACCCACACCGCCGCGCCCCTTTCTCTTCTTTTTCCCCTCTTCTCACCTCCACTGAGCCCAGAAACCATAGCGCCAGCTCCTCCTCTCCACCAAAGCCCAGAGCGGCAGCGGCCACTTTCTCCATTCCTGGGTCTCCTCTCGTCTGCCACCAAACAACCGCGACACCCAACCTTCTCCGCAGCGTCCTTACGGCGTTCCAACCCGTCACCACTCCCCTGTCCGAACTTTAGCTCCGCCAACCATCACCGTCGGCCTCTACGAGCCACTGCAACCCTCTTCCCTTTTCTCCCCTTTGCGTGTTCTCTGTCTTCCTCAGCCACACCAACGAACCGGCCACCTTCTCCTCCCTCTCTCTCACTGGCCGAACCGCCGCGCCGTCGACGAGCCACAGCGACACCGACGATGAGCCCCTTTCCCCCTTTCTTCTTCCTTCTCTGTCATCTCGTCTCACCATCGCAAACCAGTCTAGCACTGTCGCGATTCCAGCCCCGTTTCCCGTTCTCCCATAGAACGACCAGAACAGGGTGCAGCCCCTGTGTCTTCCATCCCCTCCGTTTTCTCCTGTTTCATGGCTGCGTTCACTCTCCGCTCCTGCAATTGAAGCAGTGCTACTACCAGGCCGCCGCTTCTGCCCCGGCCAATTTAGCCATCATCTTCCCTTCACCTGTTCATTCTTTGCTTCCCAGGGGAGTGGTGACGGGTTGGAACGCCGTAAGGACGCTGCGGAGAAGGTTGGGTGTCGCAGCTGTTTGGTGGCAGACGAGAGGAGACCCAGGAATGGAGAAGGTGGCCGCTGCCGCTCTGGGCTTTGGTGGAGAGGAGGAGCTGGCGCTGTGGTTTCTGGGCTCAGCGGAGGTGAGAAGAGGGGAAGAAGAAGAGAAAGGGGCGCGGCGGTGTGGGCTGTCGCCGGAGGTTATGGTGAAGGGAGGTGGCTGTGGCGGTGCTGAGGTGATGGTGATGGAGATATGGCTTGGGGGGTGGGAGTGCCACGTAGGTTCGGAAACTCACGAACCAAGCTCAAATCTAAGTCGGGGTACTTTTGTCAGACGGACAGCATCTATCATAGATGGTAACATGGAGGTGAATTGGGCTAATGGTTTCACAACGAAGGTTGCACCTTATGAAGTTTTTCGAATTGAAAAACATGAAGGTTCATCTGTTATCTCCATTCCTCATGAAACTAATGTTGACAAGTTACCTCAAGAGATGATTGAACACAGAAGTCTACCCTCTGACATCATTGTGTGGGAGGATGATTTGGGGGAAGAATGA 1827 0.5364 MQSQLVCNGCRSILLYPRGATNVCCALCNTITSVPPPGMEMSQLVCGGCRTLLMYTRGATSVRCSCCQTVNLAPPAPSQVAHVHCGNCRTTLMYPYGAPSVKCALCQYVTNVNMNNGRLPIPVHRPNGTTNYGTVPSTSTSMPQSQTQTVVIENPMTVDSNGKLVSNVVVGYRHGHLPSPQPPATTHTAAPLSLLFPLFSPPLSPETIAPAPPLHQSPERQRPLSPFLGLLSSATKQPRHPTFSAASLRRSNPSPLPCPNFSSANHHRRPLRATATLFPFLPFACSLSSSATPTNRPPSPPSLSLAEPPRRRRATATPTMSPFPPFFFLLCHLVSPSQTSLALSRFQPRFPFSHRTTRTGCSPCVFHPLRFLLFHGCVHSPLLQLKQCYYQAAASAPANLAIIFPSPVHSLLPRGVVTGWNAVRTLRRRLGVAAVWWQTRGDPGMEKVAAAALGFGGEEELALWFLGSAEVRRGEEEEKGARRCGLSPEVMVKGGGCGGAEVMVMEIWLGGWECHVGSETHEPSSNLSRGTFVRRTASIIDGNMEVNWANGFTTKVAPYEVFRIEKHEGSSVISIPHETNVDKLPQEMIEHRSLPSDIIVWEDDLGEE 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g04101 608 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 43 72 IPR005735 -
Adu03g04101 608 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 4 34 IPR005735 -
Adu03g04101 608 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 82 112 IPR005735 -
Adu03g04101 608 Pfam LSD1 zinc finger 46 70 IPR005735 -
Adu03g04101 608 Pfam LSD1 zinc finger 85 109 IPR005735 -
Adu03g04101 608 Pfam LSD1 zinc finger 7 31 IPR005735 -
Adu03g04101 608 MobiDBLite consensus disorder prediction 290 316 - -
Adu03g04101 608 MobiDBLite consensus disorder prediction 235 255 - -
Adu03g04101 608 PANTHER PROTEIN LSD1 1 172 IPR040319 -
Adu03g04101 608 PANTHER LSD1-LIKE PROTEIN 1 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g04101 Adu-Chr3 130107229 130113747 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Adu03g04101 zf-LSD1 7.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g04101 - - gmx:100776394 327.02