Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g04038 ATGACAGACCCGGATCCCTCCAAAAAGGTCGCCGATAGGTATCTGAAGCGTGAAATCCTTGGTGAAGGTACCTATGGAGTTGTATACAAAGCCATTGATACTCACACCGGACAAACCGTTGCGATTAAGAAAATTCGACTTGGCAAGCAGAAAGAAGGGGTCAACTTTACAGCACTCAGAGAAATTAAACTTCTTAAAGAGCTCAAAGATCCCAACATTATTGAGTTAATCGATGCATTCCCGCATAAAGGGAATTTACATCTTGTATTCGAATTCATGGACACGGACCTTGAAGCTGTCATACGAGATCGAAATATTTTTCTTTCTCCAGCTGATACAAAATCCTACCTCCAAATGACGCTAAAGGGTCTTGCTTTTTGCCACAAGAAATGGGTTTTGCATAGGGATATGAAGCCAAATAATTTGTTGATAGGATCTCATGGACAGCTGAAACTTGCAGATTTTGGTTTGGCACGCATATTTGGAAGTCCGGATAGAAGGTTCACACATCAGGTGTTTGCTCGGTGGTACAGAGCACCTGAGCTATTATTTGGTGCAAAGCAATATGGTTCAGGGGTAGATGTTTGGGCTGCAGCTTGTATTTTTGCTGAACTTCTTCTCCGCCGACCCTTTTTGCAGGGTTCAAGTGATATCGATCAGTTAGGCAAGATTTTTGCAGCATTTGGCACTCCGACACCTGCTCAGTGGCCTGATATGGTATATCTTCCAGATTACGTTGAATATCAATGTGTTCCTGCCCCCCCTTTGCGTACTTTGTTTCCAACAGCAAGTGACGATGCTTTAGATCTATTGTCAAAGATGTTTACATATGATCCAAAAGCTAGAATTTCAGTGCAGCAGGCACTAGAGCACAGATACTTTTCTTCTGCACCTCTGCCCACAGATCCAGAGAAGCTCCCTAGGCCAGCCCCAAAGAAGGAATCTAGGGCTTCTGATTTTGATTTGCAGCAGGGTCCTACTGTGTTATCACCTCCAAGAAAGTCTAGGAGAGTGATGCCTGGGCGTGATGGGTTCGAAGGAAATTCTTTTCAAGGAGTGAAGGATGATGATGGAAATTTCGGTGATTTCAGACAGACAGTTGGTGATAATACAGGCAAGAACCAACCAGTTCCAATTGCTGACAGATTACATTTAAAAAGAAAATTAGATCTAGAATTTCAACAACCAGAATGA 1194 0.4288 MTDPDPSKKVADRYLKREILGEGTYGVVYKAIDTHTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKDPNIIELIDAFPHKGNLHLVFEFMDTDLEAVIRDRNIFLSPADTKSYLQMTLKGLAFCHKKWVLHRDMKPNNLLIGSHGQLKLADFGLARIFGSPDRRFTHQVFARWYRAPELLFGAKQYGSGVDVWAAACIFAELLLRRPFLQGSSDIDQLGKIFAAFGTPTPAQWPDMVYLPDYVEYQCVPAPPLRTLFPTASDDALDLLSKMFTYDPKARISVQQALEHRYFSSAPLPTDPEKLPRPAPKKESRASDFDLQQGPTVLSPPRKSRRVMPGRDGFEGNSFQGVKDDDGNFGDFRQTVGDNTGKNQPVPIADRLHLKRKLDLEFQQPE 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g04038 397 CDD STKc_CDK7 13 307 IPR037770 GO:0005675|GO:0008353|GO:0070985
Adu03g04038 397 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Adu03g04038 397 MobiDBLite consensus disorder prediction 294 381 - -
Adu03g04038 397 ProSiteProfiles Protein kinase domain profile. 14 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Adu03g04038 397 SMART serkin_6 14 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Adu03g04038 397 SUPERFAMILY Protein kinase-like (PK-like) 10 301 IPR011009 -
Adu03g04038 397 Pfam Protein kinase domain 16 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Adu03g04038 397 Gene3D Phosphorylase Kinase; domain 1 6 94 - -
Adu03g04038 397 PANTHER CYCLIN-DEPENDENT KINASE D-2 9 354 - -
Adu03g04038 397 ProSitePatterns Protein kinases ATP-binding region signature. 20 44 IPR017441 GO:0005524
Adu03g04038 397 PANTHER CELL DIVISION PROTEIN KINASE 9 354 - -
Adu03g04038 397 Gene3D Transferase(Phosphotransferase) domain 1 95 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g04038 Adu-Chr3 129473724 129476866 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g04038 4 394 Core Cell Cycle Gene Families AT1G18040 74.555 0.0 582
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK7 Adu03g04038 Pkinase 1.6e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g04038 K02202 - gmx:100776618 707.983
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu03g04038 03 129473724 129476866 Adu05g02723 05 94709075 94713251 PCT