Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g04002 ATGGTGGCGAAATCAGGCGAGAATGGCTGTGTGGCTCCGTTCCTTCAGAAGTGCTACGATATGGTCTCCGACCCTTCCACCGACTCCGTCATCTCTTGGACCCATCAAGGCCACACCTTCCTCATCTCCGATATCACCCAATTCTCCCTCACTCTTCTCCCCAATTACTTCAAGCACAACAACTTCTCCAGCTTCATCCGCCAGCTCAACATCTACGGCTTCAGGAAAATTGATACGGACCGCTGGGAATTCGCCAATGACAACTTTGTGAAGGGTCAAAAGCATTTGTTGATCAATATTCGGAGAAGGAAACATCCGCACGCTGCAGATCATCAAAAGCCAGACAATTCTGATGAAGCACCAGCAAATGATGGGCTTTGGAAGGAAGTGGAGAATCTAAAATCCAACAAGAATTCCCTCATGCAGGAGTTGGTTAAACTCAGGCAGCATCAAGAATCTGCCGAGAATAAGCTGCTACTCCTCACTGATCGCCTTCAAGGAATGGAGAAGCATCAGCAGCAGATGCTATCATTCTTGGTCATGGTTGTTCAAAGTCCCGGCTTCATGGTTCAACTCCTTCAGCCTAACGAAAACAATTGGCGAATGGCCGAACTTGGAGATGGGAATGGGATGATAGTAAAGTATAAACCTCCGGTGCCCGAAAATCTCAAGCCTGTAGTTCCCCGATCACCCACTTTCGAGAAGCAACCGGAACCTGAGCTTTCTTTCGATGGTTTAAAAGACTTGTGCATCAGTTCTGAGTTCTTGAAAGTTCTTATGGATGAGAAGTTGTCTCCTTTGGAAAATCATCCTCCATTTCTTCTTCCGGATTTACCCGATGATGGTTCATGGGAGCAACTTTTTCTTGGCAGTCCTTTCTTGCAAAACACTGATGAAGCTGACAAGCCCACTGTCAGCGGAATGGAGATAGAACCCATCACACCCGAAGATCAAACTGAAAAGTCTCAGTCTTTTGAATCTTTGATTCTAGAAATGGAGAAAACTGAAGAGACCGATGCATTGGAATTACGAGCTGATGGAGTTCATTTGGAGGGGTCGGAGAAACTGAAATCTCTAACCAAGCAAATGGAACTTCTGGCTTCTGAAACTGACAATGAAGAGGAGGAGGAAGAGGAAGGAAGGAACTGA 1149 0.4613 MVAKSGENGCVAPFLQKCYDMVSDPSTDSVISWTHQGHTFLISDITQFSLTLLPNYFKHNNFSSFIRQLNIYGFRKIDTDRWEFANDNFVKGQKHLLINIRRRKHPHAADHQKPDNSDEAPANDGLWKEVENLKSNKNSLMQELVKLRQHQESAENKLLLLTDRLQGMEKHQQQMLSFLVMVVQSPGFMVQLLQPNENNWRMAELGDGNGMIVKYKPPVPENLKPVVPRSPTFEKQPEPELSFDGLKDLCISSEFLKVLMDEKLSPLENHPPFLLPDLPDDGSWEQLFLGSPFLQNTDEADKPTVSGMEIEPITPEDQTEKSQSFESLILEMEKTEETDALELRADGVHLEGSEKLKSLTKQMELLASETDNEEEEEEEGRN 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g04002 382 MobiDBLite consensus disorder prediction 109 123 - -
Adu03g04002 382 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-8 1 313 - -
Adu03g04002 382 MobiDBLite consensus disorder prediction 103 123 - -
Adu03g04002 382 ProSitePatterns HSF-type DNA-binding domain signature. 53 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Adu03g04002 382 Gene3D - 7 104 IPR036388 -
Adu03g04002 382 SMART hsfneu3 10 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Adu03g04002 382 Coils Coil 130 157 - -
Adu03g04002 382 Pfam HSF-type DNA-binding 14 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Adu03g04002 382 SUPERFAMILY "Winged helix" DNA-binding domain 11 103 IPR036390 -
Adu03g04002 382 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 1 313 IPR027725 -
Adu03g04002 382 Coils Coil 356 376 - -
Adu03g04002 382 PRINTS Heat shock factor (HSF) domain signature 14 37 IPR000232 GO:0003700|GO:0006355|GO:0043565
Adu03g04002 382 PRINTS Heat shock factor (HSF) domain signature 52 64 IPR000232 GO:0003700|GO:0006355|GO:0043565
Adu03g04002 382 PRINTS Heat shock factor (HSF) domain signature 65 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Adu03g04002 382 MobiDBLite consensus disorder prediction 359 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g04002 Adu-Chr3 129130544 129132374 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g04002 11 368 HSF AT1G67970 45.504 5.86e-95 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Adu03g04002 HSF_DNA-bind 6.1e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g04002 K09419 - gmx:100813694 493.812