Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g03988 ATGGCCGCCAACAACAATCCGCATTCTCTCACTGATCAGAATGCAAATTCTATGCCTCTGCTTATTCTTGATCATCAATTCTCCACTACCACTGCTCTTAGGCTTCTGGTCGTTGATCATGATCTTGAACACTTAAGACTTATTCAAGATATGGCTTTTCAATGCAACTATCAAGTGACCACATGCTTCGAGGGTTCTTATGCTTTGAATCTTCTTCGGGAGAGTAGTGGGTGTTTCGATGTGGTACTATGTGATTTTCATATGCCAGGGATAATGGATGATGGTTCTCGCTTACTTGACCATGTTCTCCAAGAATTCAACATTCCTGTCGTAATGATGTGTGCAACAGATGATGAGTCATCAAGTGCAGTGATGGAGGGTATGAAAAAGAAAGGGGCTTGTTATAATTTAGTTAAACCTCTTAGCGAGCAAGATTTGAGGAACATATGGCAGAATGTGGTGGAGAAAACCCAGAAAGAAGTTTGCTATGATGATGATGAAAGCAAAGGAACAGTTAATAGAAGGAAGAGGAGCTTATCAACGGAAAGAGACGATCATGATCATGATGTTCAGCCCAACACTCCTAACAAGAAGCCACGTTTTATTTGGACCACAGAAAGGCATCAAATGTTCGTCGATGCTATACTCCAACTAGGGATTGATAAAGCTGTGCCAAGAAAAATTCTAGAATTGATGGATATCCCTGGTTTGAGAAGGGAAAATGTAATTCTAGAATTGATGGATATCCCTGGTTTGAGAAGGGAAAATGTAGCAAGCCATCTCCAGTCTCAACCCATTGTTAGTGCTGTACCTCATGCTTTGATGAAATCCCCTAATAGTAATAGTAATCCCTTTGACATCAACAACGGCATTGTTGGAAGTAATATGACACTTAATCATCAGAATAATAATGATTATGGTCGTTACATTATTCAACAATCTAATTATAATTATCCGATGATGGCTCCTCAATCCTGGGATGGAGCTGCTTTTCAAGGGAGAATGAGGGGAGATAGTGGTGGCTGTAGGAGTGATCCTCTCGTTGATTACAATGCATATTCATCTTCATCATCATCAGCATCAGCCCCACTTGATCATTATCATCATCAAATGAATAATTCAGTCAGCGAAAGTGGTGGCATTGCTGATATCCTCAATGATGGCTATATTCCAACCTCATCACTTGATAATACTAAAATAAAATGA 1206 0.3972 MAANNNPHSLTDQNANSMPLLILDHQFSTTTALRLLVVDHDLEHLRLIQDMAFQCNYQVTTCFEGSYALNLLRESSGCFDVVLCDFHMPGIMDDGSRLLDHVLQEFNIPVVMMCATDDESSSAVMEGMKKKGACYNLVKPLSEQDLRNIWQNVVEKTQKEVCYDDDESKGTVNRRKRSLSTERDDHDHDVQPNTPNKKPRFIWTTERHQMFVDAILQLGIDKAVPRKILELMDIPGLRRENVILELMDIPGLRRENVASHLQSQPIVSAVPHALMKSPNSNSNPFDINNGIVGSNMTLNHQNNNDYGRYIIQQSNYNYPMMAPQSWDGAAFQGRMRGDSGGCRSDPLVDYNAYSSSSSSASAPLDHYHHQMNNSVSESGGIADILNDGYIPTSSLDNTKIK 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g03988 401 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR14 243 315 - -
Adu03g03988 401 Gene3D - 194 242 - -
Adu03g03988 401 Gene3D - 243 266 - -
Adu03g03988 401 PANTHER TWO-COMPONENT RESPONSE REGULATOR 30 242 IPR045279 GO:0009736
Adu03g03988 401 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 198 242 IPR006447 GO:0003677
Adu03g03988 401 SUPERFAMILY Homeodomain-like 196 262 IPR009057 -
Adu03g03988 401 SUPERFAMILY CheY-like 33 157 IPR011006 -
Adu03g03988 401 SMART REC_2 33 150 IPR001789 GO:0000160
Adu03g03988 401 Pfam Response regulator receiver domain 36 149 IPR001789 GO:0000160
Adu03g03988 401 ProSiteProfiles Response regulatory domain profile. 34 154 IPR001789 GO:0000160
Adu03g03988 401 PANTHER TWO-COMPONENT RESPONSE REGULATOR 243 315 IPR045279 GO:0009736
Adu03g03988 401 MobiDBLite consensus disorder prediction 164 194 - -
Adu03g03988 401 Gene3D - 32 170 - -
Adu03g03988 401 MobiDBLite consensus disorder prediction 164 199 - -
Adu03g03988 401 CDD REC_typeB_ARR-like 36 154 - -
Adu03g03988 401 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR14 30 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g03988 Adu-Chr3 129051899 129053697 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g03988 33 241 Response Regulator Gene Family AT4G16110 39.916 3.68e-42 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Adu03g03988 Response_reg 1e-11 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g03988 - K14491 adu:107481405 598.586