LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Adu03g03985	ATGCCATCGGTGACGTGGGGTGTGATTCAAGGTCACAAGGAGAAGCTGTGTGAGGAAGAACATAATTCCTGTTTTGGGGTACTTGGAAAAAATTGGATTTCAATATCCAAACTTGGGGGATTCATTAAGAGCTACCCGCAGGTATTGCATGCTAGTGTGATTGTTGAGCTTGTCCCTGTTGTGAAGTTCCTTAGGGGACTTGATGTGGAGAGGGAGGATATTGGGGATATTGGTCCCATGGTTACTCAGTATCCTTATTTTTTGGGGATGAGAGTTGGGACTGTGATCAAGCCTTTTATTGATTACTTAGTCTCTTTGGGACTGCCAAAGAAGATTTTGGCTAAGATGTTGGAGAAGAGGGCCTATTTGCTTGGATATGATCTTGAAGAGACTATCAAGCCAAATGTGGATTGTTTGATTAGCTTTGGGATAGGGAGGGAGTGTTTGCCTTCGGTTATTGCACAGTATCCTCAGATTCTTGGATTGCCCCTCAAGGCCAAGTTGTCTTCGCAGCAGTACTTCTTCAGTTTGAAGTTTAAGACTGATCCTGAAGGTTTTGCACGAGTTGTGGAGAAGATGCCGCAGGTGGTTAGCCTTCACCAAAACGTGATCATGAAGCCGGTCGAGTTCCTCCTCGGAAGGGCTATAACACCGCATGATGTGGCTAGCATGGTGGTCAAGTGTCCGCAGTTAGTAGCACTGAGAGTGGAGCTCATGAAGAACAGTTTTTACTTCTTTAAGAGTGAGATGGGAAGACCACTGAAAGAGCTTGTGGAGTTCCCTGAATACTTTACTTACAGTCTGGAGTCTAGGGTCAAACCAAGATACCAAAGGCTATAA	840	0.45	MPSVTWGVIQGHKEKLCEEEHNSCFGVLGKNWISISKLGGFIKSYPQVLHASVIVELVPVVKFLRGLDVEREDIGDIGPMVTQYPYFLGMRVGTVIKPFIDYLVSLGLPKKILAKMLEKRAYLLGYDLEETIKPNVDCLISFGIGRECLPSVIAQYPQILGLPLKAKLSSQQYFFSLKFKTDPEGFARVVEKMPQVVSLHQNVIMKPVEFLLGRAITPHDVASMVVKCPQLVALRVELMKNSFYFFKSEMGRPLKELVEFPEYFTYSLESRVKPRYQRL	279

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Adu03g03985	279	PANTHER	CGI-12 PROTEIN-RELATED	76	279	IPR003690	GO:0003690\|GO:0006355
	Adu03g03985	279	PANTHER	CGI-12 PROTEIN-RELATED	39	75	IPR003690	GO:0003690\|GO:0006355
	Adu03g03985	279	SMART	mt_12	114	145	IPR003690	GO:0003690\|GO:0006355
	Adu03g03985	279	SMART	mt_12	254	279	IPR003690	GO:0003690\|GO:0006355
	Adu03g03985	279	SMART	mt_12	39	70	IPR003690	GO:0003690\|GO:0006355
	Adu03g03985	279	SMART	mt_12	150	182	IPR003690	GO:0003690\|GO:0006355
	Adu03g03985	279	SMART	mt_12	78	109	IPR003690	GO:0003690\|GO:0006355
	Adu03g03985	279	SMART	mt_12	187	217	IPR003690	GO:0003690\|GO:0006355
	Adu03g03985	279	SMART	mt_12	222	253	IPR003690	GO:0003690\|GO:0006355
	Adu03g03985	279	Pfam	mTERF	77	279	IPR003690	GO:0003690\|GO:0006355
	Adu03g03985	279	Pfam	mTERF	33	77	IPR003690	GO:0003690\|GO:0006355
	Adu03g03985	279	Gene3D	Transcription termination factor 3, mitochondrial	76	279	IPR038538	-
	Adu03g03985	279	PANTHER	EXPRESSED PROTEIN	39	75	-	-
	Adu03g03985	279	PANTHER	EXPRESSED PROTEIN	76	279	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Adu03g03985	Adu-Chr3	129013399	129014499	Dispersed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	mTERF	Adu03g03985		mTERF	1.5e-66	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Adu03g03985	K15032		-	gmx:100809590	426.017

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Adu03g03985	03	129013399	129014499	Adu05g02710	05	94603849	94606322	PCT