Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g03965 ATGTCATCGAAAATGTCTGCACCCGCCGCCGTTGAACAGCCGACGGAGCCGCCGAAGTCAGTCAAGGAGAAAAAGCCCAAGGCTCCCAAGAAGCAGCCCAAACAGGCCAAAACCGCTTCTCACCCTCCATATTTTCAGATGATTAAGGAGGCGTTGGTGGCTTTGAACGAGAAAGGCGGTTCGAGCCCTTACGCGATAGCTAAGTACATGGAGGAGAAGCACAAGGCGGTGCTGCCCGAGAATTTCAGGAAGATTCTTGCGTTGCAGCTCAAGAACCAAACCGCCAAAGGGAACCTCCTTAAGATCAAGGCCTCCTACAAGCTCTCCGGTGCCGCCAAGAAGGACAAGAAGGAAATCTCGATGAAGCAGCAGAAACCGCAGCAGCGCCCCAAGCGGAGTGCCTCCGTGGCGGCGAAGGGTGGTGTTAAGAAGACGAAGAAGGTGTCGACGCCGGCAAAGCCGAAGCAGCCAAAGTCGCTAAAGTCTCCGGCAAAGAGGGCCAGGAAGGGCACTGCAGCTGCCTGA 525 0.5581 MSSKMSAPAAVEQPTEPPKSVKEKKPKAPKKQPKQAKTASHPPYFQMIKEALVALNEKGGSSPYAIAKYMEEKHKAVLPENFRKILALQLKNQTAKGNLLKIKASYKLSGAAKKDKKEISMKQQKPQQRPKRSASVAAKGGVKKTKKVSTPAKPKQPKSLKSPAKRARKGTAAA 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g03965 174 MobiDBLite consensus disorder prediction 108 125 - -
Adu03g03965 174 Pfam linker histone H1 and H5 family 41 107 IPR005818 GO:0000786|GO:0003677|GO:0006334
Adu03g03965 174 SMART h15plus2 38 105 IPR005818 GO:0000786|GO:0003677|GO:0006334
Adu03g03965 174 SUPERFAMILY "Winged helix" DNA-binding domain 37 118 IPR036390 -
Adu03g03965 174 Gene3D - 35 121 IPR036388 -
Adu03g03965 174 PRINTS Histone H5 signature 27 48 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Adu03g03965 174 PRINTS Histone H5 signature 54 71 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Adu03g03965 174 PRINTS Histone H5 signature 158 174 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Adu03g03965 174 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 40 110 IPR005818 GO:0000786|GO:0003677|GO:0006334
Adu03g03965 174 MobiDBLite consensus disorder prediction 1 43 - -
Adu03g03965 174 CDD H15 38 117 IPR005818 GO:0000786|GO:0003677|GO:0006334
Adu03g03965 174 PANTHER HISTONE H1 13 172 - -
Adu03g03965 174 MobiDBLite consensus disorder prediction 106 174 - -
Adu03g03965 174 PANTHER HISTONE H1 13 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g03965 Adu-Chr3 128824007 128824898 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g03965 37 108 Single Myb Histone (SMH) Gene Family AT1G72740 37.500 1.74e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g03965 K11275 - gmx:100500169 200.29