Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g03944 ATGATGATGGAGGAGAGGAAGAAGTTTGTGTGCAAGTATTGCAGCAAGAGGTTTCCATGTGGCAAGTCTCTTGGTGGTCACATCAGGACCCACATCACTGAAGAAAGAACCACCATCAATGCTTCTTCTTCTCCCATTGCTGCTAACACTCATGATCTTCTTCTCAAGAAGAGGAAGAGGGATTCATCATGGCCTACTCAATCTGCTGCTGTTGGTGGTGGTGCTGCTGCTGGTAACAATAATAATAGCCCCATTTATGGGCTAAGGGAGAATCCTAAGAAGACAACAAGGTTTGTGCATATTGATGGTGCTGCTGCCACCAACTTGGCACGTGAGAAGGAAGAAAGGTTCTGCAAGGAATGTGGGAAAGGCTTTCCATCAATGAAAGCTCTGTGTGGCCACATGGCTTGTCACTCTGACAAAGACAAAGACAGAGAGAAATTGGTGGTTATGGCTATGGATGATGATGGTGATGATGATGAATATGGTGATAATAATAGCCAATCTGATGCTGAGAGTTCTGGTGGTGCTGCTGCTTCGTTGCTTCCAAGGAGGAGATCCAAGAGGATGATGAGGTTCAAGAATCTCAGACCCTTTTGTTCTTCTTCTCCATCTGCTTCTGTCTCTGAAGTGGAGCAGCAGCAGGAGGAGCAAGAAGAGGTTGCTAGGATGCTCATGATGCTCTCAAGAGATTCCGGCCGGAGGGGTCGATTCGTGTCTCTTACTGAGTCTTCTGATAACAATTCTGTTGTTCTTAACACCAACAAGGTTGCTGCTGTGACTGTGAGTAATAACGATGGCAGGAAGAACTTTGTGCCTAATGATTCAGATTCAGCTGCTGGGTCTCTGAGGAGTGGCCTCAAGAACAAAATGGTTGATTCAGATGTCTCAATGGATGAATTCAAAGGGTGGAAGAATGTTAAAGATAAAGACAAAGAGAGAAGAAGCAAATACAGTAGTACTGTTGCTTTTGCTGCTGCAGTTAAGGATTTGGAATATGAAACAACAATATCTACTACTGCTACTACAAGGAAGAAGTTTGATTTCAGAAAGAGAGCAAATTATGATTCTCTTATTCACAGTTCAACTGAGGTTCCTACCAAGAATGAAAAAACTGGTTTCGCCAATGATGAATATGATGATTGTTCTTATGATTCAACAGAATATGATGATGTTGATGAAGATGAAGAGAGTGATGAGAACAGCACTGATACTGATACTGATTCATTTCCTGCTCCAAAGGCTCATAGCACTAAGGCCAGCACAAAGGCTAATAAGAAAAAGAAGAACATTAAGAAGAAGTTGAAGTCAAAGAAAAGCAAGGAACATGAATGTCCAATTTGCTACAAGATTTTCAAGTCAGGACAAGCATTAGGAGGACACAAAAGATCCCATTTCATTGGAGGTTCATCAGAGGAGAACACCTTGGTCATCAAGCAGCATCATGCTGCTCCTTCTTCTCTTGTTGTTGTTCCTAATTGCCTAATTGATCTCAATCTTCCTGCTCCTGTTGATGACTAA 1521 0.4241 MMMEERKKFVCKYCSKRFPCGKSLGGHIRTHITEERTTINASSSPIAANTHDLLLKKRKRDSSWPTQSAAVGGGAAAGNNNNSPIYGLRENPKKTTRFVHIDGAAATNLAREKEERFCKECGKGFPSMKALCGHMACHSDKDKDREKLVVMAMDDDGDDDEYGDNNSQSDAESSGGAAASLLPRRRSKRMMRFKNLRPFCSSSPSASVSEVEQQQEEQEEVARMLMMLSRDSGRRGRFVSLTESSDNNSVVLNTNKVAAVTVSNNDGRKNFVPNDSDSAAGSLRSGLKNKMVDSDVSMDEFKGWKNVKDKDKERRSKYSSTVAFAAAVKDLEYETTISTTATTRKKFDFRKRANYDSLIHSSTEVPTKNEKTGFANDEYDDCSYDSTEYDDVDEDEESDENSTDTDTDSFPAPKAHSTKASTKANKKKKNIKKKLKSKKSKEHECPICYKIFKSGQALGGHKRSHFIGGSSEENTLVIKQHHAAPSSLVVVPNCLIDLNLPAPVDD 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g03944 506 MobiDBLite consensus disorder prediction 381 404 - -
Adu03g03944 506 MobiDBLite consensus disorder prediction 367 438 - -
Adu03g03944 506 Gene3D Classic Zinc Finger 2 66 - -
Adu03g03944 506 SUPERFAMILY beta-beta-alpha zinc fingers 7 138 IPR036236 -
Adu03g03944 506 SMART c2h2final6 443 465 IPR013087 -
Adu03g03944 506 SMART c2h2final6 116 138 IPR013087 -
Adu03g03944 506 SMART c2h2final6 9 31 IPR013087 -
Adu03g03944 506 ProSitePatterns Zinc finger C2H2 type domain signature. 445 465 IPR013087 -
Adu03g03944 506 MobiDBLite consensus disorder prediction 420 438 - -
Adu03g03944 506 MobiDBLite consensus disorder prediction 155 186 - -
Adu03g03944 506 ProSitePatterns Zinc finger C2H2 type domain signature. 118 138 IPR013087 -
Adu03g03944 506 ProSitePatterns Zinc finger C2H2 type domain signature. 11 31 IPR013087 -
Adu03g03944 506 Pfam C2H2-type zinc finger 443 465 - -
Adu03g03944 506 Pfam C2H2-type zinc finger 118 140 - -
Adu03g03944 506 Pfam C2H2-type zinc finger 9 31 - -
Adu03g03944 506 ProSiteProfiles Zinc finger C2H2 type domain profile. 116 143 IPR013087 -
Adu03g03944 506 ProSiteProfiles Zinc finger C2H2 type domain profile. 443 465 IPR013087 -
Adu03g03944 506 MobiDBLite consensus disorder prediction 405 419 - -
Adu03g03944 506 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 3 506 - -
Adu03g03944 506 ProSiteProfiles Zinc finger C2H2 type domain profile. 9 36 IPR013087 -
Adu03g03944 506 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 3 506 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g03944 Adu-Chr3 128578311 128580714 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g03944 7 506 C2H2 Transcription Factor Family AT1G26610 38.336 8.67e-70 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Adu03g03944 zf-C2H2_6 1.3e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g03944 - - aip:107634772 847.425