Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g03929 ATGCACCAACAAGCCACATACCAACCCTTTTTGAATGGGAATATGGTGAATAAAAGAAAAGAGAGGGAAAGTGAAGAAGGAGTGGGAACTAAGAACACTGAAGAATTGAGCAATGAATGGGAGCAGATAAGGGAGGAGGCTGCATCAGTGGCAGCTGCACTACTTGGAGCAAGAAGAGCAAAGAAGCGCTACATTGGCGTGCGCCAACGTCCTTCAGGGCGATGGGTGGCTGAGATCAAAGACACCATACAGAATATTAGGCTGTGGTTAGGCACCTATGACACTGCCGAAGATGCTGCTAGAGCTTATGATGAGGCTGCTCGCTTGCTTCGCGGCGCTAATACCCGCACTAATTTCTTTCCATCACAAGATCCTAATTCTGTTCCAGCTCTTCCTTCAAAGATCGCGAAGCTCCTCCTTCTTAGGCTCAAAGCTAGAAGCATTTCCTCTTCTTGCATGGTTACTACTTTTCCTAGTAACCATTTTGAGCAAGAAAAAAAGGCCGAACCAGAACCAGAACCAGAGCTAGAACTAGAACCAAAACCAGAACCACTTTTTTCTAAACTAATAGAAGAACAAACATACCAATTAGAAAATTTTCTAGATATTGAGGGATATGGGGCTGTTGGAGAGAATTATGATGGTGCTAGTTATGGTTCTGCTGCCACAACTAGTTGTGACTGTAGTACCATTACTTGTGACTATGGTGGAACTAACAATGTAGCAAATTTTGACCAAGAGGTTTGCATGGAGAATTTCAAGATGGAGGATGGTTGTGCTAACAATGTTGATGATGGAAGAAACAATCAAATTGTTAGGCCTAAAGGAGAATTTGAAGACTGCAATGCTGGTTTCATAGACTTCCACTTTTTGGACACTGTTGGATCATTGGTTTGCTCTTCTTCTCCTTTTGAAATAACTGAGGAAATGGTAGGGCCAATGGTGGAAGAGAATTATGATGTGGATGATTCACCATTGCTTAGGATGAAGTATGAAAGAAAATTCTCAGCATGTCTTTATACATTCATTGGTGTTGGTGAGTGTTTGAGGCTGCAGGATCGACCTGAATAG 1071 0.4248 MHQQATYQPFLNGNMVNKRKERESEEGVGTKNTEELSNEWEQIREEAASVAAALLGARRAKKRYIGVRQRPSGRWVAEIKDTIQNIRLWLGTYDTAEDAARAYDEAARLLRGANTRTNFFPSQDPNSVPALPSKIAKLLLLRLKARSISSSCMVTTFPSNHFEQEKKAEPEPEPELELEPKPEPLFSKLIEEQTYQLENFLDIEGYGAVGENYDGASYGSAATTSCDCSTITCDYGGTNNVANFDQEVCMENFKMEDGCANNVDDGRNNQIVRPKGEFEDCNAGFIDFHFLDTVGSLVCSSSPFEITEEMVGPMVEENYDVDDSPLLRMKYERKFSACLYTFIGVGECLRLQDRPE 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g03929 356 CDD AP2 62 119 IPR001471 GO:0003700|GO:0006355
Adu03g03929 356 SMART rav1_2 63 126 IPR001471 GO:0003700|GO:0006355
Adu03g03929 356 ProSiteProfiles AP2/ERF domain profile. 63 120 IPR001471 GO:0003700|GO:0006355
Adu03g03929 356 PANTHER AP2/ERF DOMAIN TRANSCRIPTION FACTOR 18 355 - -
Adu03g03929 356 SUPERFAMILY DNA-binding domain 63 120 IPR016177 GO:0003677
Adu03g03929 356 MobiDBLite consensus disorder prediction 1 36 - -
Adu03g03929 356 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 18 355 - -
Adu03g03929 356 Gene3D AP2/ERF domain 62 121 IPR036955 GO:0003700|GO:0006355
Adu03g03929 356 PRINTS Ethylene responsive element binding protein signature 86 102 IPR001471 GO:0003700|GO:0006355
Adu03g03929 356 PRINTS Ethylene responsive element binding protein signature 64 75 IPR001471 GO:0003700|GO:0006355
Adu03g03929 356 Pfam AP2 domain 63 112 IPR001471 GO:0003700|GO:0006355
Adu03g03929 356 MobiDBLite consensus disorder prediction 16 36 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g03929 Adu-Chr3 128436152 128437222 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g03929 61 122 AP2-EREBP Transcription Factor Family AT5G19790 73.846 3.56e-27 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Adu03g03929 AP2 4.8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g03929 K09286 - gmx:100793940 303.523
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu03g03929 03 128436152 128437222 Adu03g03929 03 128436152 128437222 ECH