Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g03902 ATGGCGGAGTGCCGCATTTGTCAGGAGGAAGACACCGTCAACAATCTCGAGTCGCCATGTGCTTGCAGCGGTAGTCTCAAGTATGCTCACAGAAAGTGCGTCCAGCATTGGTGCGATGAGAAAGGAGACATTATTTGTGAGATATGTCACAAGCCCTATGAACCTGGTTATACTGCCCCACCACCACGTGCACATCCTGAAGAAACTACCATTGATATAGGGGGAGGTTGGACAATTTCTGGCACACCTTTGGACTTGCGGGATCCTCGTCTCTTGGCAATTGCTGAGGCGGAACGCCAATTCTTGGAAGCAGAGTATGATGGATATGCTGCTTCTAATGCCAGCGGTGCTGCATTTTGCCGATCAGCTGCTCTTATTTTGATGGCTCTTCTACTCTTGAGGCATGCACTTGCAGTCACAGATGAAGATGCCGATGATGATCCATCCACTTTCTTCTCTCTTTTCTTGCTTCGAGCTGCTGGGTTTCTTTTGCCTTGCTACATCATGGCTTGGGCAATCAGTATTTTGCAACGTCGGCGACAAAGACAAGAGGCTGCAGCACTGGCGGCAACTCAAGTCGCGTTCGTTTTTCAATCCGGGCAGCGTAGGGGTCTGCAGTTCGCCATTGCACCAGGACCTGCAGTGAGTACACACCAGGAACAAGTGTAG 669 0.5037 MAECRICQEEDTVNNLESPCACSGSLKYAHRKCVQHWCDEKGDIICEICHKPYEPGYTAPPPRAHPEETTIDIGGGWTISGTPLDLRDPRLLAIAEAERQFLEAEYDGYAASNASGAAFCRSAALILMALLLLRHALAVTDEDADDDPSTFFSLFLLRAAGFLLPCYIMAWAISILQRRRQRQEAAALAATQVAFVFQSGQRRGLQFAIAPGPAVSTHQEQV 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g03902 222 SUPERFAMILY RING/U-box 3 54 - -
Adu03g03902 222 SMART ringv_2 3 50 IPR011016 GO:0008270
Adu03g03902 222 Pfam RING-variant domain 4 49 IPR011016 GO:0008270
Adu03g03902 222 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 1 210 - -
Adu03g03902 222 Coils Coil 92 112 - -
Adu03g03902 222 ProSiteProfiles Zinc finger RING-CH-type profile. 1 56 IPR011016 GO:0008270
Adu03g03902 222 Pfam Protein of unknown function (DUF3675) 55 173 IPR022143 -
Adu03g03902 222 CDD RING_CH-C4HC3_MARCH 4 50 - -
Adu03g03902 222 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 210 IPR033275 -
Adu03g03902 222 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 59 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g03902 Adu-Chr3 128028974 128031181 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g03902 3 53 C3H Transcription Factor Family AT2G22120 40.741 6.04e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g03902 - - ahf:112734090 420.239