Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g03900 ATGGACTTGACCTCAAACAATACCCACACCTTAGATTCAGATACTAAAACCCCACCACCAACCCAACCCACCAACACCAACACCCTAAAGTCACTATCTTTAACCAACGGCACACACAACAACAACCACCACCGCCACCAGTCCACCACCAGGCTTCCTCCGCCGTCCATGGCGGTTATTTCCTACAAAGAATGTCTCAAGAACCACGCCGCCAGCATAGGTGGCCATGCACTTGACGGTTGCGGCGAGTTCATGCCTTCCTCCTCCACCAACCCCACCGACCCTCGCTCCCTCAAGTGCGCCGCCTGCGGCTGCCATCGCAACTTCCACCGCCGTGACCCTCCAGAGCCTTCCAGCACCACCACCCCCACCTTTTTAAACTGCTTCTACTCCCCGTCCACCGGCACCAACACTGCACCACCACCGGCGCCGCCGCAACCTCTCCCTCATCGCGGCATGAGCCAAAGTACAAGCCCAAGCCAAAGCTCAAGCCCAAGCCAGAGCCCTAGCCCGATGTCAAGCCCTTCTTCACCGCCACCACTGTCTCACGTGCCACCACCACCACCACCATCAGCACCAGGTTCTTACCACTCCTCCGCACCGCACATGCTCTTAGCCTTAGGCACCGCGTATTCTGCAGTTCCTTCAGATCACGAGCACCAACAGCTTCATCGAAACTCCTTCAACAACAGCAACAACTTCTCTCCTGTGGTTCTGAACGCCAACAGTGGCGGCAGTAATAGTAATAGCAGTAAGAACAAGAGGTACAGAACCAAGTTCAGCCAAGAACAGAAGGAGAAGATGTACAGATTCTCTGAGAAATTGGGTTGGAGAATGAACAACAAAGGTGATGATTCTCTTGTTCAGGAGTTTTGTAATGACATTGGTGTCCCTAGAGGTGTCTTCAAGGTTTGGATGCACAATAACAAGAACACTTTCAACAAGAAGAGATCCTCTTCTTCCGAACCTCCTCTTCCTCCTCCTGCTGCTGGAAACAACCACATCAATGATCATGATCAGAAAATCAATGCTACTGCTGCTGCTGATGATAATGCTTCTGCCTTCTTCACTTTCTTCCTCACGCTTTTTGCTGCATAA 1098 0.5209 MDLTSNNTHTLDSDTKTPPPTQPTNTNTLKSLSLTNGTHNNNHHRHQSTTRLPPPSMAVISYKECLKNHAASIGGHALDGCGEFMPSSSTNPTDPRSLKCAACGCHRNFHRRDPPEPSSTTTPTFLNCFYSPSTGTNTAPPPAPPQPLPHRGMSQSTSPSQSSSPSQSPSPMSSPSSPPPLSHVPPPPPPSAPGSYHSSAPHMLLALGTAYSAVPSDHEHQQLHRNSFNNSNNFSPVVLNANSGGSNSNSSKNKRYRTKFSQEQKEKMYRFSEKLGWRMNNKGDDSLVQEFCNDIGVPRGVFKVWMHNNKNTFNKKRSSSSEPPLPPPAAGNNHINDHDQKINATAAADDNASAFFTFFLTLFAA 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g03900 365 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 62 113 IPR006456 -
Adu03g03900 365 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 44 321 - -
Adu03g03900 365 MobiDBLite consensus disorder prediction 312 337 - -
Adu03g03900 365 MobiDBLite consensus disorder prediction 215 264 - -
Adu03g03900 365 MobiDBLite consensus disorder prediction 150 170 - -
Adu03g03900 365 Pfam ZF-HD protein dimerisation region 60 113 IPR006456 -
Adu03g03900 365 MobiDBLite consensus disorder prediction 225 255 - -
Adu03g03900 365 MobiDBLite consensus disorder prediction 1 55 - -
Adu03g03900 365 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 254 311 IPR006455 -
Adu03g03900 365 MobiDBLite consensus disorder prediction 115 136 - -
Adu03g03900 365 SUPERFAMILY Homeodomain-like 240 315 IPR009057 -
Adu03g03900 365 MobiDBLite consensus disorder prediction 171 195 - -
Adu03g03900 365 Gene3D - 239 316 - -
Adu03g03900 365 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 9 44 321 - -
Adu03g03900 365 MobiDBLite consensus disorder prediction 109 199 - -
Adu03g03900 365 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 62 113 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g03900 Adu-Chr3 128002115 128003715 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g03900 60 313 ZF-HD Transcription Factor Family AT1G69600 43.359 2.82e-55 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Adu03g03900 ZF-HD_dimer 3.1e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g03900 - - gmx:102660309 281.182