LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Adu03g03900	ATGGACTTGACCTCAAACAATACCCACACCTTAGATTCAGATACTAAAACCCCACCACCAACCCAACCCACCAACACCAACACCCTAAAGTCACTATCTTTAACCAACGGCACACACAACAACAACCACCACCGCCACCAGTCCACCACCAGGCTTCCTCCGCCGTCCATGGCGGTTATTTCCTACAAAGAATGTCTCAAGAACCACGCCGCCAGCATAGGTGGCCATGCACTTGACGGTTGCGGCGAGTTCATGCCTTCCTCCTCCACCAACCCCACCGACCCTCGCTCCCTCAAGTGCGCCGCCTGCGGCTGCCATCGCAACTTCCACCGCCGTGACCCTCCAGAGCCTTCCAGCACCACCACCCCCACCTTTTTAAACTGCTTCTACTCCCCGTCCACCGGCACCAACACTGCACCACCACCGGCGCCGCCGCAACCTCTCCCTCATCGCGGCATGAGCCAAAGTACAAGCCCAAGCCAAAGCTCAAGCCCAAGCCAGAGCCCTAGCCCGATGTCAAGCCCTTCTTCACCGCCACCACTGTCTCACGTGCCACCACCACCACCACCATCAGCACCAGGTTCTTACCACTCCTCCGCACCGCACATGCTCTTAGCCTTAGGCACCGCGTATTCTGCAGTTCCTTCAGATCACGAGCACCAACAGCTTCATCGAAACTCCTTCAACAACAGCAACAACTTCTCTCCTGTGGTTCTGAACGCCAACAGTGGCGGCAGTAATAGTAATAGCAGTAAGAACAAGAGGTACAGAACCAAGTTCAGCCAAGAACAGAAGGAGAAGATGTACAGATTCTCTGAGAAATTGGGTTGGAGAATGAACAACAAAGGTGATGATTCTCTTGTTCAGGAGTTTTGTAATGACATTGGTGTCCCTAGAGGTGTCTTCAAGGTTTGGATGCACAATAACAAGAACACTTTCAACAAGAAGAGATCCTCTTCTTCCGAACCTCCTCTTCCTCCTCCTGCTGCTGGAAACAACCACATCAATGATCATGATCAGAAAATCAATGCTACTGCTGCTGCTGATGATAATGCTTCTGCCTTCTTCACTTTCTTCCTCACGCTTTTTGCTGCATAA	1098	0.5209	MDLTSNNTHTLDSDTKTPPPTQPTNTNTLKSLSLTNGTHNNNHHRHQSTTRLPPPSMAVISYKECLKNHAASIGGHALDGCGEFMPSSSTNPTDPRSLKCAACGCHRNFHRRDPPEPSSTTTPTFLNCFYSPSTGTNTAPPPAPPQPLPHRGMSQSTSPSQSSSPSQSPSPMSSPSSPPPLSHVPPPPPPSAPGSYHSSAPHMLLALGTAYSAVPSDHEHQQLHRNSFNNSNNFSPVVLNANSGGSNSNSSKNKRYRTKFSQEQKEKMYRFSEKLGWRMNNKGDDSLVQEFCNDIGVPRGVFKVWMHNNKNTFNKKRSSSSEPPLPPPAAGNNHINDHDQKINATAAADDNASAFFTFFLTLFAA	365

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Adu03g03900	365	ProSiteProfiles	Zinc-finger ZF-HD dimerization-type profile.	62	113	IPR006456	-
Adu03g03900	365	PANTHER	ZINC-FINGER HOMEODOMAIN PROTEIN 2	44	321	-	-
Adu03g03900	365	MobiDBLite	consensus disorder prediction	312	337	-	-
Adu03g03900	365	MobiDBLite	consensus disorder prediction	215	264	-	-
Adu03g03900	365	MobiDBLite	consensus disorder prediction	150	170	-	-
Adu03g03900	365	Pfam	ZF-HD protein dimerisation region	60	113	IPR006456	-
Adu03g03900	365	MobiDBLite	consensus disorder prediction	225	255	-	-
Adu03g03900	365	MobiDBLite	consensus disorder prediction	1	55	-	-
Adu03g03900	365	TIGRFAM	homeo_ZF_HD: homeobox domain, ZF-HD class	254	311	IPR006455	-
Adu03g03900	365	MobiDBLite	consensus disorder prediction	115	136	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Adu03g03900	Adu-Chr3	128002115	128003715	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Adu03g03900	60	313	ZF-HD Transcription Factor Family	AT1G69600	43.359	2.82e-55	179

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	zf-HD	Adu03g03900		ZF-HD_dimer	3.1e-29	No_clan

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Adu03g03900	-		-	gmx:102660309	281.182

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