Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g03878 ATGTCCACCAGAAGATCCTCTTCCGCTGCTCCAACTTCCGCCGGGATGACCGATGCTCAAATCACCGATCTCGTCTCCAAGTTGCAACAACTCATCCCTCAGCTCCGCTCTACGCATTCCGACAAGGTTTCTGCGGCAAAGGTGTTACAAGAGACTTGTACCTACATTAAGACCTTGCATAGAGAGGTTGATGATCTTAGCGACCGATTGTCCCAGCTTTTGGCCAACACAGACTCAAATACCGCACAAGCAGCCATTATTAGGAGCTTACTTATGTAA 279 0.4875 MSTRRSSSAAPTSAGMTDAQITDLVSKLQQLIPQLRSTHSDKVSAAKVLQETCTYIKTLHREVDDLSDRLSQLLANTDSNTAQAAIIRSLLM 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g03878 92 PANTHER TRANSCRIPTION FACTOR PRE 1 92 IPR044293 GO:0006355|GO:0040008|GO:0046983
Adu03g03878 92 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 20 82 IPR036638 GO:0046983
Adu03g03878 92 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 5 59 IPR011598 GO:0046983
Adu03g03878 92 Gene3D - 19 88 IPR036638 GO:0046983
Adu03g03878 92 CDD bHLH_AtPRE_like 17 76 - -
Adu03g03878 92 Coils Coil 56 76 - -
Adu03g03878 92 Pfam Helix-loop-helix DNA-binding domain 20 59 IPR011598 GO:0046983
Adu03g03878 92 PANTHER TRANSCRIPTION FACTOR PRE6 1 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g03878 Adu-Chr3 127604144 127605091 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g03878 16 91 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G74500 70.130 1.68e-31 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Adu03g03878 HLH 2.2e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g03878 - - gmx:100804830 134.806