LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Adu03g03877	ATGACAACAATGATGATGAAACCACACCACCGTCATCACAGTGTCTGGCTTGGCTTCCTCTGCTCAATTCGCTCATCTAAATTCTCCACCTTCTCTGAACTTGAAACCAGAAACATGTCTAGTGGATATACCGTAGAAGTTACCAGTCTATCGCCAAAAGCCACTGAGAAGGATGTGTATGACTTTTTCGCATTCTCTGGTGCAATTGAGTATGTCGAAATTGTCAGGTCTGGTGATTATGCTTGCACTGCATATGTGACATTCAAAGATGCTTATTCCCTAGAAACTGCTTGCTTGCTAAGTGGAGCCACGATTTTAGACCAAAGTGTATGCATTACTCGCTGGGGGCAGTATGAAGATGAGTTCGATCATTGGAACCGGCCATCCTATAACCATGACGACGATTCATCAACTACGCTACAAAGCCACCAATTTGTTTCCTCTGCCGGAGAAGTAGTTACAGTGACTCAAGAAGTTGTCAAGACCATGATAGCAAAAGGGTATGTCCTCAGCAAAGACGCATTAGCCAAGGCTAAGGAATTCGACGAGTCCCATGGGGTTTCAGCCACGGCAACAGCAAAGGTAGCCGAGCTGAGCCAGAGAATCGGCCTCACCGACAAGTTATCAGCTAGCTATGAGGCCGTTAGATCCGCCGATCAAAGGTATCATGTATCAGAAACTGCCAAGTCAGCTGCATTTGCCACGGGACGATCTGTGGCTGCAGCTGCGAACACTGTAGTTAATAGTAGCTATTTCTCTAAGGGTGCCTTCTGGGTTTCCGGTGCTTTAACCCGGGCAGCACAGGTTGCTTCCGATTTAGCATTATCTTCAGCTTTCCAATTAACTGTATACTCATTTTTGGTGCAGACGTTGGGTATAGGACATGCATTTTCTTCATTTATCTGGCTCTGTGGCCCCATTACTGGCCTTGTGGTTCAACCCTGTGTTGGTATATGGAGTGATAAATGTACTTCGAAGTATGGTAGAAGGCGTCCATTCATTCTGGCAGGATCCCTTATGATTTCCTTGGCTGTGATATTAATTGGGTTTTCTGCAGACATTGGATATTTATTCGGGGATACAAGTGAGCATTGCAGCACATTTAAAGGCACCCGAACAAGAGCTGCTCTTGTATTTATTCTTGGGTTCTGGATGCTGGATCTTGCCAACAACACTGTGCAGGGGCCAGCTCGGGCACTTTTGGCTGATCTTTCAGGTCCTGATCAACGCAATGTAGCAAATGCTATATTTTGTTCATGGATGGCAGTTGGCAATATCCTGGGATATTCTGCTGGTGCTAGTGGAAAGTGGAACAGATGGTTCCCTTTCCTGACAAATAGAGCTTGCTGTGAAGCCTGTGGCAATCTTAAGGCCGCATTTCTTGTTGCTGTGGTTTTCTTGACATTATGCACACTTGTCACCCTATATTTTGCTGATGAGGTTCCGCTTACTACAACTCAGCATCGTCGCTTATCAGATTCTGATCCTTTATTGGATGAACAACAACAAAATGGCTTTGAATTCTCAAAATCAAAGCCTTTATCAAATGACATCAATGGAAAGATAAATGAGGATCACATTGAGAAAGATGTAGAGCTAAAACATGAGAATTTGCAAGCTGGGGAAGATCATAATGAAAACTTTATGGATGGACCTGGAGCAGTATTAGTAAACTTATTGACAAGTTTAAGGCATTTGCCACCTGCAATGCACTCAGTGCTTGTTGTAATGGCTCTTACTTGGTTGTCATGGTTTCCCTTCTTTCTGTTTGATACGGATTGGATGGGGAGGGAAGTTTATCATGGAGATCCTAAAGGGAGCTCTGCTGAAGTAGGTCTTTATGATCAAGGTGTTAGAGAAGGTGCATTTGGTTTGCTGTTGAATTCAATTGTCCTGGGAATTAGCTCGTTTTTCATTGAACCAATGTGTAACTGGATGGGTGCAAGAATAGTATGGGCTGTTAGCAATTTTATCGTCTTTGTTTGCATGGCTGGCACTGCTATAATTAGTCTGATTTCCATCCAAGATCACCCTGGAGGTATTCAACATGTAATTGGAGCAAGTGAAGGAATCAAGGTTGCTTCCTTGGTTGTGTTTGTTCTTCTTGGTTTTCCTCTTGCGATTACCTATAGTGTTCCCTTTGCTGTCACAGCGGAGCTGACTGCTGATTCAGGTGGTGGCCAAGGATTGGCTATAGGAGTTCTAAATCTTGCAATCGTTGTTCCACAGATGGTCATATCCCTTGGTTCTGGTCCATGGGATGCTCTCTTTGGTGGCGGCAATGTTCCTGCCTTTGTTTTGGCATCGATATGTGCTCTAGCAGGCGGCATTATTGCGACTCTCAAACTGCCAAATCTATCTAACAGTTCTTTCAAGTCTTCAGGATTTCACTTCGGCTAA	2400	0.4412	MTTMMMKPHHRHHSVWLGFLCSIRSSKFSTFSELETRNMSSGYTVEVTSLSPKATEKDVYDFFAFSGAIEYVEIVRSGDYACTAYVTFKDAYSLETACLLSGATILDQSVCITRWGQYEDEFDHWNRPSYNHDDDSSTTLQSHQFVSSAGEVVTVTQEVVKTMIAKGYVLSKDALAKAKEFDESHGVSATATAKVAELSQRIGLTDKLSASYEAVRSADQRYHVSETAKSAAFATGRSVAAAANTVVNSSYFSKGAFWVSGALTRAAQVASDLALSSAFQLTVYSFLVQTLGIGHAFSSFIWLCGPITGLVVQPCVGIWSDKCTSKYGRRRPFILAGSLMISLAVILIGFSADIGYLFGDTSEHCSTFKGTRTRAALVFILGFWMLDLANNTVQGPARALLADLSGPDQRNVANAIFCSWMAVGNILGYSAGASGKWNRWFPFLTNRACCEACGNLKAAFLVAVVFLTLCTLVTLYFADEVPLTTTQHRRLSDSDPLLDEQQQNGFEFSKSKPLSNDINGKINEDHIEKDVELKHENLQAGEDHNENFMDGPGAVLVNLLTSLRHLPPAMHSVLVVMALTWLSWFPFFLFDTDWMGREVYHGDPKGSSAEVGLYDQGVREGAFGLLLNSIVLGISSFFIEPMCNWMGARIVWAVSNFIVFVCMAGTAIISLISIQDHPGGIQHVIGASEGIKVASLVVFVLLGFPLAITYSVPFAVTAELTADSGGGQGLAIGVLNLAIVVPQMVISLGSGPWDALFGGGNVPAFVLASICALAGGIIATLKLPNLSNSSFKSSGFHFG	799

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Adu03g03877	799	SMART	rrm1_1	44	114	IPR000504	GO:0003723
	Adu03g03877	799	PANTHER	SUGAR TRANSPORTER	261	799	-	-
	Adu03g03877	799	PANTHER	SUCROSE TRANSPORT PROTEIN SUC3	261	799	-	-
	Adu03g03877	799	CDD	RRM_Vip1_like	45	113	IPR034360	-
	Adu03g03877	799	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	43	117	IPR000504	GO:0003723
	Adu03g03877	799	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	47	106	IPR000504	GO:0003723
	Adu03g03877	799	Gene3D	-	24	120	IPR012677	-
	Adu03g03877	799	CDD	MFS_SLC45_SUC	278	779	-	-
	Adu03g03877	799	Pfam	Major Facilitator Superfamily	275	739	IPR011701	GO:0022857\|GO:0055085
	Adu03g03877	799	SUPERFAMILY	RNA-binding domain, RBD	41	116	IPR035979	GO:0003676

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Adu03g03877	Adu-Chr3	127583413	127593815	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Adu03g03877	346	799	Sucrose Transporter Gene Family	AT2G02860	70.925	0.0	682

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Adu03g03877	K15378		-	gmx:100803894	922.924

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Adu03g03877	03	127583413	127593815	Adu03g03877	03	127583413	127593815	ECH

Showing 1 to 1 of 1 entries