Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g03877 ATGACAACAATGATGATGAAACCACACCACCGTCATCACAGTGTCTGGCTTGGCTTCCTCTGCTCAATTCGCTCATCTAAATTCTCCACCTTCTCTGAACTTGAAACCAGAAACATGTCTAGTGGATATACCGTAGAAGTTACCAGTCTATCGCCAAAAGCCACTGAGAAGGATGTGTATGACTTTTTCGCATTCTCTGGTGCAATTGAGTATGTCGAAATTGTCAGGTCTGGTGATTATGCTTGCACTGCATATGTGACATTCAAAGATGCTTATTCCCTAGAAACTGCTTGCTTGCTAAGTGGAGCCACGATTTTAGACCAAAGTGTATGCATTACTCGCTGGGGGCAGTATGAAGATGAGTTCGATCATTGGAACCGGCCATCCTATAACCATGACGACGATTCATCAACTACGCTACAAAGCCACCAATTTGTTTCCTCTGCCGGAGAAGTAGTTACAGTGACTCAAGAAGTTGTCAAGACCATGATAGCAAAAGGGTATGTCCTCAGCAAAGACGCATTAGCCAAGGCTAAGGAATTCGACGAGTCCCATGGGGTTTCAGCCACGGCAACAGCAAAGGTAGCCGAGCTGAGCCAGAGAATCGGCCTCACCGACAAGTTATCAGCTAGCTATGAGGCCGTTAGATCCGCCGATCAAAGGTATCATGTATCAGAAACTGCCAAGTCAGCTGCATTTGCCACGGGACGATCTGTGGCTGCAGCTGCGAACACTGTAGTTAATAGTAGCTATTTCTCTAAGGGTGCCTTCTGGGTTTCCGGTGCTTTAACCCGGGCAGCACAGGTTGCTTCCGATTTAGCATTATCTTCAGCTTTCCAATTAACTGTATACTCATTTTTGGTGCAGACGTTGGGTATAGGACATGCATTTTCTTCATTTATCTGGCTCTGTGGCCCCATTACTGGCCTTGTGGTTCAACCCTGTGTTGGTATATGGAGTGATAAATGTACTTCGAAGTATGGTAGAAGGCGTCCATTCATTCTGGCAGGATCCCTTATGATTTCCTTGGCTGTGATATTAATTGGGTTTTCTGCAGACATTGGATATTTATTCGGGGATACAAGTGAGCATTGCAGCACATTTAAAGGCACCCGAACAAGAGCTGCTCTTGTATTTATTCTTGGGTTCTGGATGCTGGATCTTGCCAACAACACTGTGCAGGGGCCAGCTCGGGCACTTTTGGCTGATCTTTCAGGTCCTGATCAACGCAATGTAGCAAATGCTATATTTTGTTCATGGATGGCAGTTGGCAATATCCTGGGATATTCTGCTGGTGCTAGTGGAAAGTGGAACAGATGGTTCCCTTTCCTGACAAATAGAGCTTGCTGTGAAGCCTGTGGCAATCTTAAGGCCGCATTTCTTGTTGCTGTGGTTTTCTTGACATTATGCACACTTGTCACCCTATATTTTGCTGATGAGGTTCCGCTTACTACAACTCAGCATCGTCGCTTATCAGATTCTGATCCTTTATTGGATGAACAACAACAAAATGGCTTTGAATTCTCAAAATCAAAGCCTTTATCAAATGACATCAATGGAAAGATAAATGAGGATCACATTGAGAAAGATGTAGAGCTAAAACATGAGAATTTGCAAGCTGGGGAAGATCATAATGAAAACTTTATGGATGGACCTGGAGCAGTATTAGTAAACTTATTGACAAGTTTAAGGCATTTGCCACCTGCAATGCACTCAGTGCTTGTTGTAATGGCTCTTACTTGGTTGTCATGGTTTCCCTTCTTTCTGTTTGATACGGATTGGATGGGGAGGGAAGTTTATCATGGAGATCCTAAAGGGAGCTCTGCTGAAGTAGGTCTTTATGATCAAGGTGTTAGAGAAGGTGCATTTGGTTTGCTGTTGAATTCAATTGTCCTGGGAATTAGCTCGTTTTTCATTGAACCAATGTGTAACTGGATGGGTGCAAGAATAGTATGGGCTGTTAGCAATTTTATCGTCTTTGTTTGCATGGCTGGCACTGCTATAATTAGTCTGATTTCCATCCAAGATCACCCTGGAGGTATTCAACATGTAATTGGAGCAAGTGAAGGAATCAAGGTTGCTTCCTTGGTTGTGTTTGTTCTTCTTGGTTTTCCTCTTGCGATTACCTATAGTGTTCCCTTTGCTGTCACAGCGGAGCTGACTGCTGATTCAGGTGGTGGCCAAGGATTGGCTATAGGAGTTCTAAATCTTGCAATCGTTGTTCCACAGATGGTCATATCCCTTGGTTCTGGTCCATGGGATGCTCTCTTTGGTGGCGGCAATGTTCCTGCCTTTGTTTTGGCATCGATATGTGCTCTAGCAGGCGGCATTATTGCGACTCTCAAACTGCCAAATCTATCTAACAGTTCTTTCAAGTCTTCAGGATTTCACTTCGGCTAA 2400 0.4412 MTTMMMKPHHRHHSVWLGFLCSIRSSKFSTFSELETRNMSSGYTVEVTSLSPKATEKDVYDFFAFSGAIEYVEIVRSGDYACTAYVTFKDAYSLETACLLSGATILDQSVCITRWGQYEDEFDHWNRPSYNHDDDSSTTLQSHQFVSSAGEVVTVTQEVVKTMIAKGYVLSKDALAKAKEFDESHGVSATATAKVAELSQRIGLTDKLSASYEAVRSADQRYHVSETAKSAAFATGRSVAAAANTVVNSSYFSKGAFWVSGALTRAAQVASDLALSSAFQLTVYSFLVQTLGIGHAFSSFIWLCGPITGLVVQPCVGIWSDKCTSKYGRRRPFILAGSLMISLAVILIGFSADIGYLFGDTSEHCSTFKGTRTRAALVFILGFWMLDLANNTVQGPARALLADLSGPDQRNVANAIFCSWMAVGNILGYSAGASGKWNRWFPFLTNRACCEACGNLKAAFLVAVVFLTLCTLVTLYFADEVPLTTTQHRRLSDSDPLLDEQQQNGFEFSKSKPLSNDINGKINEDHIEKDVELKHENLQAGEDHNENFMDGPGAVLVNLLTSLRHLPPAMHSVLVVMALTWLSWFPFFLFDTDWMGREVYHGDPKGSSAEVGLYDQGVREGAFGLLLNSIVLGISSFFIEPMCNWMGARIVWAVSNFIVFVCMAGTAIISLISIQDHPGGIQHVIGASEGIKVASLVVFVLLGFPLAITYSVPFAVTAELTADSGGGQGLAIGVLNLAIVVPQMVISLGSGPWDALFGGGNVPAFVLASICALAGGIIATLKLPNLSNSSFKSSGFHFG 799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g03877 799 SMART rrm1_1 44 114 IPR000504 GO:0003723
Adu03g03877 799 PANTHER SUGAR TRANSPORTER 261 799 - -
Adu03g03877 799 PANTHER SUCROSE TRANSPORT PROTEIN SUC3 261 799 - -
Adu03g03877 799 CDD RRM_Vip1_like 45 113 IPR034360 -
Adu03g03877 799 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 43 117 IPR000504 GO:0003723
Adu03g03877 799 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 47 106 IPR000504 GO:0003723
Adu03g03877 799 Gene3D - 24 120 IPR012677 -
Adu03g03877 799 CDD MFS_SLC45_SUC 278 779 - -
Adu03g03877 799 Pfam Major Facilitator Superfamily 275 739 IPR011701 GO:0022857|GO:0055085
Adu03g03877 799 SUPERFAMILY RNA-binding domain, RBD 41 116 IPR035979 GO:0003676
Adu03g03877 799 Gene3D MFS general substrate transporter like domains 269 782 IPR036259 -
Adu03g03877 799 SUPERFAMILY MFS general substrate transporter 276 786 IPR036259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g03877 Adu-Chr3 127583413 127593815 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g03877 346 799 Sucrose Transporter Gene Family AT2G02860 70.925 0.0 682
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g03877 K15378 - gmx:100803894 922.924
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu03g03877 03 127583413 127593815 Adu03g03877 03 127583413 127593815 ECH