Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g03874 ATGAAGAAACAGGAAGAACAGTGTAACAGAGAATCTAAGAAGAAGGGTCACATTGTAACTTGGACTCAAGAGGAAGATGATATACTGAGAGAGCAGATTGGTATCCATGGAACTGAAAATTGGGCAATTATTGCTTCTAAATTCAAGGACAAAACGACAAGACAGTGCAGAAGAAGATGGTACACTTACTTGAATTCTGATTTCAAGAAAGGTGGATGGTCACCAGAGGAAGACATGCTTTTGTGTGAGGCTCAAAAATTATATGGCAACAGATGGACAGAAATAGCGAAAGTGGTTTCAGGAAGAACGGATAATGCTGTGAAAAATCGCTTCTCTACACTCTGCAGAAAGAGGCAAAAATATGAAGCTTTAGCTAAAGAGAACAGCATTTCATCACACATAAATTCAAATAACAAGAAAATTGTTTTCCAACATGCTTATAATACAGATGCAACATCAGAATCTGCTATATCTATCAAGAAAATGAGGAGGGCTCATATCACGGATGATGGAGGGAAGATCAAGTTTGGAGATAGATCACATTTGCGAAATGGAACTTTGATAAATCAGCATCCAAGGACACCATTCGCAGTATTAGCTCAAAACTCACAAAACATAAACAATTTGCTAGACGAGCTTCAAATTTGCAATGCCAAGTTTAGTAGTTCTGCTCAAAATAATAAAACTCAAGGAACATTTCTAAAAAGGGATGACCCAAAAATAGATGCATTAATGCAACAAGCAGAGTTGCTTAGCTCACTAGCTCAAAATATTGATACAGAGGACATGGACCAAAGTCTTGAAAACACGTGGAAGGTTCTTCAAGAGTTTTTGAACCGAACCAAAGAAGCAAACAATTTGAAATGCAAGATTCAAGGTTTAAAGCTTGCTGATCTTAAAAATATGGTTGAAGACTTGAGTAGTAATGAGGGAGGCCAGCCATGTTGGAGGCAAATGGATCTGTATGAAGACTCTCCAGCCAGTTCTGAATACAGTACAGGATCAACTATCCTCCCTCTCTCAGCTGGTGACATTATGGAACACTCTTCACACCGGGATATAAAAACTGAAATGAAAACCACACAAATTGAAGATAAGAAAGAAGTAGATGGATGTGAGAGAGGTGTTCTAGTTACTGCAACCTTGGATCAAGTAGATATGCTGCCGAATTCGGAAGAACAAATAAACAATGATAGCACTGTTTCTGCCTCATCAAGAGTGGAGTTTGGTTCCCCTGTTCAAGTAACTCCGATATTCAGATCTTTGGCTGCAGGGATTCCCAGCCCACAATTTTCGGAAAGTGAAAGGAACTTCTTAAGGAAAACACTAGGAGTGGAGTCTCCATCTCTCAACCCAAGTGCTCAACCATCACAACCGCCACCCTGCAAAAGAGCCCTACTAGACAGTTTACAATCCTAG 1419 0.3946 MKKQEEQCNRESKKKGHIVTWTQEEDDILREQIGIHGTENWAIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDMLLCEAQKLYGNRWTEIAKVVSGRTDNAVKNRFSTLCRKRQKYEALAKENSISSHINSNNKKIVFQHAYNTDATSESAISIKKMRRAHITDDGGKIKFGDRSHLRNGTLINQHPRTPFAVLAQNSQNINNLLDELQICNAKFSSSAQNNKTQGTFLKRDDPKIDALMQQAELLSSLAQNIDTEDMDQSLENTWKVLQEFLNRTKEANNLKCKIQGLKLADLKNMVEDLSSNEGGQPCWRQMDLYEDSPASSEYSTGSTILPLSAGDIMEHSSHRDIKTEMKTTQIEDKKEVDGCERGVLVTATLDQVDMLPNSEEQINNDSTVSASSRVEFGSPVQVTPIFRSLAAGIPSPQFSESERNFLRKTLGVESPSLNPSAQPSQPPPCKRALLDSLQS 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g03874 472 SUPERFAMILY Homeodomain-like 20 111 IPR009057 -
Adu03g03874 472 CDD SANT 73 114 IPR001005 -
Adu03g03874 472 PANTHER TRANSCRIPTION FACTOR MYB88 11 467 - -
Adu03g03874 472 SMART sant 17 66 IPR001005 -
Adu03g03874 472 SMART sant 69 117 IPR001005 -
Adu03g03874 472 Pfam Myb-like DNA-binding domain 21 81 - -
Adu03g03874 472 Coils Coil 199 219 - -
Adu03g03874 472 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 119 IPR017930 -
Adu03g03874 472 CDD SANT 20 64 IPR001005 -
Adu03g03874 472 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 64 IPR017930 -
Adu03g03874 472 ProSiteProfiles Myb-like domain profile. 21 64 IPR001005 -
Adu03g03874 472 PANTHER MYB PROTEIN-RELATED 11 467 - -
Adu03g03874 472 Gene3D - 72 145 - -
Adu03g03874 472 Gene3D - 7 69 - -
Adu03g03874 472 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g03874 Adu-Chr3 127515244 127518686 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g03874 59 470 MYB Transcription Factor Family AT1G14350 51.202 6.74e-128 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Adu03g03874 Myb_DNA-bind_6 8.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g03874 K09422 - gmx:100807667 667.151
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu03g03874 03 127515244 127518686 Adu03g03874 03 127515244 127518686 ECH
Adu03g03874 03 127515244 127518686 Adu05g01745 05 39620166 39622280 PCT