Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g03859 ATGGAGCTTGCATCTGTGAAGAGTGAATTCAACCCAAGATGTAATAGGTTACACGTTATGGTGGATGGCAGCGAGGCTAATGCTTCAAGGGGCATCAAAAGGCGGCGAAGAGATTCGTCTTCGCCTCTGCCTCCAACGGTGTTAGGGGGCAATGAACAACAAGGTGAACAGCCGGAAGCCCAACAGACACCACAGAGTGGCCAATCGACCCCCAGCACCGTGAAGAGAAGTTCAAGACACAGATGGACTGGAAGGTATGAAGCACATCTATGGGATAAAGGGACATGGAATCCAACTCAGAAAAAGAAAGGAAAGCAAGGAGCTTATAATGATGAAGAAGCTGCTGCTAGAGCTTATGATTTGGCTGCACTTAAGTATTGGGGAACATCAACGTTCACCAATTTTCCAGTATCAGATTATGAGAAAGAAATTGAGATAATGAAAACTGTAACCAAAGAAGAATACCTTGCTTCATTGAGAAGAAGAAGCAGTGGATTTTCTAGAGGTGTATCAAAGTATAGAGGAGTAGCAAGGCACCATCACAATGGAAGATGGGAAGCAAGGATTGGAAGAGTGTTCGGCAACAAGTACCTTTACCTTGGAACTTACAGTACACAAGAAGAGGCAGCTCGCGCATATGATATTGCTGCAATTGAATACAGAGGCATAAATGCTGTGACAAACTTTGACTTGAGCACTTACATCAGATGGCTAAGACCAGGAGGAGTACACTCTAGCACCTCTCAAGATCAAAAGCCGAGCACAGACCCTCAGATATTTACAACCTCTAACCCCATCCTAGCCACAGGAGCCACCGAGCTATCAAACTTCAACTTCCATCCAGTCCCTGCAAGCGAATTGGACATCACCAAGAAGAAAGAGTTTTCCAAGTTTGCGGCACCTTTAAGTCCATGCTATAAGTCACCTTCATCTTCCCCAACAGCATTAGGACTTCTACTAAAATCCTCAGTGTTTAGAGAACTGATGCAGAGAAACCTGAATTCTGCAGATGAAGAAGCTGAAGAAGTTGAATTGAAATATCCAGAAGAGGGCAGTGATGGGATTGGAGGGATTCTTAATAACAATGACACTAACAGTATATCTTACTTTGGTTCTTCTTCCAATATCAACAGATTACCTAACTTAGTGTCTCCAGAAAGCAGCAAAATGCCAATGTATCACAGAACTGTTATGCCATCGCTGTGGAATGGTGCTTTCAACATTTCTGACTGA 1233 0.4363 MELASVKSEFNPRCNRLHVMVDGSEANASRGIKRRRRDSSSPLPPTVLGGNEQQGEQPEAQQTPQSGQSTPSTVKRSSRHRWTGRYEAHLWDKGTWNPTQKKKGKQGAYNDEEAAARAYDLAALKYWGTSTFTNFPVSDYEKEIEIMKTVTKEEYLASLRRRSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGINAVTNFDLSTYIRWLRPGGVHSSTSQDQKPSTDPQIFTTSNPILATGATELSNFNFHPVPASELDITKKKEFSKFAAPLSPCYKSPSSSPTALGLLLKSSVFRELMQRNLNSADEEAEEVELKYPEEGSDGIGGILNNNDTNSISYFGSSSNINRLPNLVSPESSKMPMYHRTVMPSLWNGAFNISD 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g03859 410 SUPERFAMILY DNA-binding domain 78 138 IPR016177 GO:0003677
Adu03g03859 410 SMART rav1_2 172 236 IPR001471 GO:0003700|GO:0006355
Adu03g03859 410 SMART rav1_2 79 142 IPR001471 GO:0003700|GO:0006355
Adu03g03859 410 CDD AP2 171 232 IPR001471 GO:0003700|GO:0006355
Adu03g03859 410 MobiDBLite consensus disorder prediction 44 77 - -
Adu03g03859 410 ProSiteProfiles AP2/ERF domain profile. 172 230 IPR001471 GO:0003700|GO:0006355
Adu03g03859 410 MobiDBLite consensus disorder prediction 1 80 - -
Adu03g03859 410 Gene3D AP2/ERF domain 74 138 IPR036955 GO:0003700|GO:0006355
Adu03g03859 410 Gene3D AP2/ERF domain 171 232 IPR036955 GO:0003700|GO:0006355
Adu03g03859 410 SUPERFAMILY DNA-binding domain 171 232 IPR016177 GO:0003677
Adu03g03859 410 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 401 - -
Adu03g03859 410 ProSiteProfiles AP2/ERF domain profile. 73 136 IPR001471 GO:0003700|GO:0006355
Adu03g03859 410 Coils Coil 326 346 - -
Adu03g03859 410 Pfam AP2 domain 171 222 IPR001471 GO:0003700|GO:0006355
Adu03g03859 410 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 401 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g03859 Adu-Chr3 127389996 127392259 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g03859 59 234 AP2-EREBP Transcription Factor Family AT5G57390 64.674 2.81e-76 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Adu03g03859 AP2 8.6e-12 CL0081