Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g03858 ATGGCATTAAAAAATGAAATTTTGTTGTTGTATTTTGTGTGTTTGGCATTAACATGCATTGATGCTAACATCCTTGAGAACGATAAGTACTGGACGAACCATGAACAAGAGTTCGATGGTTACTGGAAGCAAAGAGCCGAGATTGCTAAAAATGATAACCTAAAAGCCTATTTCCCTGATCCCTATGAAGTCTCTGGAAACTTCACCTCTGCCATTAGTGAGTACGTAATTGTTCTCATCATCAATGTTATCTTTAAAGGTAGAATAAGAGGAGCTGCATGCATGGCGACCAACCCCATTGACAGGTGCTGGAGGTGTGACCCAAACTGGGCTAATAACCGCCAAAAACTTGCAGATTGTGTTCAGGGATTCGGAAGAAACACCATTGGAGGAAAAGGAGGAAAATTCTACGTCGTCAACGACTCTTCAGATGGTGACTTGCTGTCTCCGAAACCAGGTACTATCCGGCATGCAGTGACAAGAACTGAACCCTTGTGGATCATCTTCTCCCGAAGCATGGTGATCAAGCTCCAGCAAGAGCTCATCATGGCCAGCAACAAGACCATTGATGGCAGGGGATTCGATGTCCAAATTGCAAATGGTGCTGGCATCACCGTGCAGTTCATCAAGAACGTCATTATCCATGGCATCAAGGTCTACAACACGGTGGTCAAGACAGGTGGCATGATTAGGGACTCCGAAACTCATTACGGATTTCGGACACAGAGTGATGGTGATGGTATCTCCATCTTTGGCGCAAGCAACATCTGGATCGACCATGTTTCCATGAGAAACTGCTCCGATGGATTGATTGATGCCATTATGGGCTCCACCGCCATTACCATCTCCAACGGCCATTACACTGACCACAATGAGGTGATGCTGTTTGGAGCGAGTGACAGCTACACCGGCGACAAGATCATGCAAATCACCTTGGCATTCAACCACTACGGCAAGAGGTGTGTTCAGAGAATGCCAAGGGCCAGACATGGTTTTGTCCATGTTGTCAACAATGACTACACTCATTGGGAGATGTATGCCATTGGTGGCAGCAAGAACCCTACCATCATCAGTGAGGGTAACAGGTTCATTGCCCCTGAAAACCGCTTTGCCAAAGAGATAACCAAGAGAGAATACGCAGAAGAAAGCATATGGAAGAACTGGCAATGGAGATCAATCAATGATGAATACTTGAATGGAGCATTCTTCGTTCAATCCGGGGCTGAATTGAAGAACAGACCATTCTCAAGGGAGGACATGATCACAGCCAAGCCAGGAACATATGTTGGAAGGCTTACACGCTTTGCGGGTGTTCTTCCATGCAAAATTGGCCAACCATGCTAG 1344 0.4598 MALKNEILLLYFVCLALTCIDANILENDKYWTNHEQEFDGYWKQRAEIAKNDNLKAYFPDPYEVSGNFTSAISEYVIVLIINVIFKGRIRGAACMATNPIDRCWRCDPNWANNRQKLADCVQGFGRNTIGGKGGKFYVVNDSSDGDLLSPKPGTIRHAVTRTEPLWIIFSRSMVIKLQQELIMASNKTIDGRGFDVQIANGAGITVQFIKNVIIHGIKVYNTVVKTGGMIRDSETHYGFRTQSDGDGISIFGASNIWIDHVSMRNCSDGLIDAIMGSTAITISNGHYTDHNEVMLFGASDSYTGDKIMQITLAFNHYGKRCVQRMPRARHGFVHVVNNDYTHWEMYAIGGSKNPTIISEGNRFIAPENRFAKEITKREYAEESIWKNWQWRSINDEYLNGAFFVQSGAELKNRPFSREDMITAKPGTYVGRLTRFAGVLPCKIGQPC 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g03858 447 Pfam Pectate lyase, N terminus 37 74 IPR007524 GO:0030570
Adu03g03858 447 Pfam Pectate lyase 180 363 IPR002022 -
Adu03g03858 447 Gene3D - 97 440 IPR012334 -
Adu03g03858 447 PANTHER PECTATE LYASE 7 447 - -
Adu03g03858 447 PRINTS Pollen allergen Amb family signature 120 137 IPR018082 -
Adu03g03858 447 PRINTS Pollen allergen Amb family signature 144 169 IPR018082 -
Adu03g03858 447 PRINTS Pollen allergen Amb family signature 180 196 IPR018082 -
Adu03g03858 447 PRINTS Pollen allergen Amb family signature 244 265 IPR018082 -
Adu03g03858 447 PRINTS Pollen allergen Amb family signature 324 343 IPR018082 -
Adu03g03858 447 PRINTS Pollen allergen Amb family signature 346 365 IPR018082 -
Adu03g03858 447 PRINTS Pollen allergen Amb family signature 388 412 IPR018082 -
Adu03g03858 447 PRINTS Pollen allergen Amb family signature 418 441 IPR018082 -
Adu03g03858 447 SUPERFAMILY Pectin lyase-like 98 438 IPR011050 -
Adu03g03858 447 PANTHER PECTATE LYASE 18-RELATED 7 447 IPR045032 GO:0030570
Adu03g03858 447 SMART amb_all 172 369 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g03858 Adu-Chr3 127386503 127388351 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g03858 38 447 Polysaccharide Lyase AT1G14420 59.624 0.0 513
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g03858 K01728 - gmx:100798579 702.975