Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g03849 ATGAAGAAGAGCGAAAAAGGCAGCAAGAAAGTGATGGAAAATAAGAAGAATGAGAAGAAAGATGTTGGCAGTGCTGCCAGCAATGCAACGATGGAAAATGACAGCGTTTTTGCTTCTTGCTCCTTCTCTAGCCTTGGCCTTCGCCCTTCCTTATGCGATGAACTGCGTGAAAAATTGGGATTCGAGGTTCCAACTCTGGTGCAAGCTCAAGCCATTCCTATTATTCTCGCTGGCCGTCATGCACTTATTAATGCTGCCACAGGCACAGGGAAGACAGTTGCCTACTTAGCTCCACTTATTCATCACTTGCAGAATTATGATACTTGCATACAACGCTCTGATGGAACATTTGCGTTGGTTCTTGTACCGACGCGTGAGCTATGTCTGCAGGTTTATGAAATTCTTCAAAAGCTATTGCATCGATTCCATTGGATTGTTCCCGGGTATGTTATGGGTGGTGAAAATAGATCAAAGGAGAAAGCTAGGCTACGCAAAGGCATATCAATTCTTATAGCAACACCTGGGCGCCTTTTAGATCATTTGAAGAATACATCATCATTCTTGTACACAAAATTGCGCTGGATAATTTTTGATGAAGCTGATAGCATTGATCCTTCAGAGTTTGATGAAGACGAAGTCAAGTATTCCAGTAAAATACCAATAGCTGTAGATTATAAAATCCCCACACAGTTAATTCAGAGATACGTGAAAGCAGTGCCTTGTGGTTCTCGGCTTGCTGTTCTTCTTTCAATTCTAAAGCATCTTTTTGAAAGAGACACTTCACAAAAGGTTGTGGTATTCTTTTCGACATGTGATGCGGTAGACTTTCACCATTCACTACTAAGTGAGTTCCACTTCTCGACTGATCCTCAAACAAAAGAAAGGGTCATACAGATGTTTCTTGGATGCCAAACTTTTCGATTGCATGGTAATATGGAACATGAAGACCGGAGATCTACTTTTCAGGCTTTTAAAACTGAGAAATCTGCTTTGCTTTTGTCCACTGATGTTTCTGCTAGAGGCCTGGATTTTCCTAAGGTTCGATGCATCATACAGTATGATTCTCCTGGGGAAGCTACTGAATATGTGCACAGAGTTGGTAGAACTGCTCGTCTGGGTGAAAGGGGAGAGTCCTTGTTATTTCTGCAACCAGTTGAAATAGATTATTTACAGGACTTGGAGAAACATGGTGTTTCACTAGCAGAAAGGCACTTGAATCATTCATCATTTCCAAGCCCAAGATGGATGAACTTGCTAGGAAGGGATTTTGCTCTTGGTGTCTCACACTCTCAACTCACTCTCCCCCAAAACAGTAGTACAGGTCAACCTTCTCAGTTTTACAGAGCCAGTGTCATCGACACCGCACTACCGCCATCTCGTCGTCAGGTCTTCTGCGTCCGCCAGTGTCTCCTTCGTAGCATTGCGTTGTCTGCACGCCTTCACCAGTGTCGCCTTCACTGCTTGTATCTGCTTGCTGCTAGCCCCCAATCATTGTCATGTCTCCTCTGTCTGGGTTCCATTTTGTCTCTATCGTGTCCTGCCGCCTATGTGTCTGGTGTTCATCTTCTATTCTTGCTTTGGTGGTGTCTGTATTAA 1596 0.4355 MKKSEKGSKKVMENKKNEKKDVGSAASNATMENDSVFASCSFSSLGLRPSLCDELREKLGFEVPTLVQAQAIPIILAGRHALINAATGTGKTVAYLAPLIHHLQNYDTCIQRSDGTFALVLVPTRELCLQVYEILQKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILIATPGRLLDHLKNTSSFLYTKLRWIIFDEADSIDPSEFDEDEVKYSSKIPIAVDYKIPTQLIQRYVKAVPCGSRLAVLLSILKHLFERDTSQKVVVFFSTCDAVDFHHSLLSEFHFSTDPQTKERVIQMFLGCQTFRLHGNMEHEDRRSTFQAFKTEKSALLLSTDVSARGLDFPKVRCIIQYDSPGEATEYVHRVGRTARLGERGESLLFLQPVEIDYLQDLEKHGVSLAERHLNHSSFPSPRWMNLLGRDFALGVSHSQLTLPQNSSTGQPSQFYRASVIDTALPPSRRQVFCVRQCLLRSIALSARLHQCRLHCLYLLAASPQSLSCLLCLGSILSLSCPAAYVSGVHLLFLLWWCLY 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g03849 531 Pfam DEAD/DEAH box helicase 66 219 IPR011545 GO:0003676|GO:0005524
Adu03g03849 531 SMART helicmild6 291 373 IPR001650 -
Adu03g03849 531 Gene3D - 233 418 IPR027417 -
Adu03g03849 531 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 251 420 IPR001650 -
Adu03g03849 531 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 72 250 IPR014001 -
Adu03g03849 531 Pfam Helicase conserved C-terminal domain 250 373 IPR001650 -
Adu03g03849 531 PANTHER RNA HELICASE 23 209 - -
Adu03g03849 531 PANTHER RNA HELICASE 221 427 - -
Adu03g03849 531 Gene3D - 1 229 IPR027417 -
Adu03g03849 531 SMART ultradead3 60 299 IPR014001 -
Adu03g03849 531 CDD SF2_C_DEAD 231 382 - -
Adu03g03849 531 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 40 69 IPR014014 GO:0003724
Adu03g03849 531 MobiDBLite consensus disorder prediction 1 27 - -
Adu03g03849 531 MobiDBLite consensus disorder prediction 1 22 - -
Adu03g03849 531 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 115 394 IPR027417 -
Adu03g03849 531 PANTHER ATP-DEPENDENT RNA HELICASE DDX31-RELATED 23 209 - -
Adu03g03849 531 PANTHER ATP-DEPENDENT RNA HELICASE DDX31-RELATED 221 427 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g03849 Adu-Chr3 127202113 127210902 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g03849 34 396 Eukaryotic Initiation Factors Gene Family AT3G19760 25.897 1.96e-33 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g03849 K14806 - smo:SELMODRAFT_134680 378.637