Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g03828 ATGGATCCGGGTGCGATGATGAACGAGGGCTCGTTTGGGAATGGGGGAGGCAATACGGTGCCGTTTAGCTTGGCGGAGATCTGGCCGTTTCCGCAGGCCGTCAACGCTGCTGGAGGCGGCGCCTTGGGGCTCAGGAGGCCGCAGTTTGGCTTGGGACAGTTTGGGGATTTCATTGCCGGTCCCAACCGGGAACCTGGAGCGGTTGCTTCAGAACAGAAGGCGGCCAGCGGTGGCGGTGGCGGTGGCGGTGGCGGTGGTAGTAGGAAGAGGCGTGAATCAGAGGAGGAATCCCCTAAGGGTGTTTCCACCAGCAATGTTGCACCTAATGCCGTGTTGCAATTTGTTTATGTAGTTAGTTCAGGAAAGCCTGCGGACCAAAATAATCAGACACCACCACCTGACCCTCCTAGGCAAGATTACATCCACGTCCGAGCCAGAAGGGGTCAAGCTACTGATAGCCACAGTCTTGCTGAAAGAGCTAGAAGGGAAAAGATTAGTGAAAGGATGAAAATTCTTCAGGATTTGGTCCCTGGTTGTAATAAGGTTATTGGAAAAGCATTGGTCCTTGATGAGATAATTAATTATATCCAATCCCTTCAGCGTCAAGTTGAGTTTTTGTCAATGAAGCTTGAAGCAGTGAATTCAAGACTGAACACTGGCATTGAAGCTTTTCCTCCTAAAGATTTTGGTCAGCAAACATTTGATCCGGCGAGCTTGCCATTTGGTTCTCAGGCTACTAGAGACTATAGCAGAGGTTCTTCCCCAGAGTGGTTACATATGCAGGTAGGAGGTGCTTTCGAAAGAGCAACGTAG 813 0.5068 MDPGAMMNEGSFGNGGGNTVPFSLAEIWPFPQAVNAAGGGALGLRRPQFGLGQFGDFIAGPNREPGAVASEQKAASGGGGGGGGGGSRKRRESEEESPKGVSTSNVAPNAVLQFVYVVSSGKPADQNNQTPPPDPPRQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRLNTGIEAFPPKDFGQQTFDPASLPFGSQATRDYSRGSSPEWLHMQVGGAFERAT 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g03828 270 Coils Coil 196 216 - -
Adu03g03828 270 Pfam Helix-loop-helix DNA-binding domain 153 200 IPR011598 GO:0046983
Adu03g03828 270 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 149 199 IPR011598 GO:0046983
Adu03g03828 270 Gene3D - 146 222 IPR036638 GO:0046983
Adu03g03828 270 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 147 217 IPR036638 GO:0046983
Adu03g03828 270 CDD bHLH_AtBPE_like 139 224 - -
Adu03g03828 270 SMART finulus 155 205 IPR011598 GO:0046983
Adu03g03828 270 MobiDBLite consensus disorder prediction 61 104 - -
Adu03g03828 270 PANTHER BNAC05G07950D PROTEIN 1 270 - -
Adu03g03828 270 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 270 IPR024097 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g03828 Adu-Chr3 127021199 127023219 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g03828 1 228 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G59640 56.540 4.57e-72 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Adu03g03828 HLH 2.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g03828 - - gmx:100784478 340.887