Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g03798 ATGGCCCGAAAGTGTATAgCTGATTTAATTCCTTTTTGTGCTTCCCCGAATTCCTTCAAGATGCAAATCTTCGTCAAGACCCTCACCGGAAAGACCATTACTCTCGAGGTCGAGAGTTCTGACACCATCGATAATGTGAAGGCGAAAATTCAAGATAAGGAAGGGATCCCTCCCGACCAGCAGCGTCTAATCTTCGCCGGAAAACAGCTGGAGGATGGCCGTACCCTTGCCGACTACAACATCCAGAAGGAGTCAACCCTTCACCTTGTCCTCCGTCTTCGCGGTGGCATGCAGATCTTCGTTAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTTGAAAGTTCCGACACCATCGACAACGTGAAGGCCAAAATTCAGGATAAGGAGGGAATCCCACCGGACCAGCAGAGGTTGATCTTCGCCGGGAAGCAGCTTGAGGATGGCCGCACCTTGGCTGACTACAACATCCAAAAGGAGTCCACCCTTCACCTTGTCCTCCGACTGCGTGGTGGAATGCAGATTTTCGTTAAGACCCTTACCGGAAAGACAATCACCCTGGAAGTTGAGAGTTCGGACACCATCGATAATGTCAAAGCAAAGATCCAAGACAAGGAGGGAATTCCCCCGGACCAGCAGAGGTTGATCTTTGCCGGAAAACAGCTCGAGGACGGCCGCACCTTAGCCGATTACAACATCCAGAAGGAATCCACCCTCCACCTTGTGCTGCGTCTTCGTGGTGGATTTTAA 750 0.5147 MARKCIADLIPFCASPNSFKMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g03798 249 PANTHER UBIQUITIN 13 172 248 - -
Adu03g03798 249 ProSiteProfiles Ubiquitin domain profile. 173 248 IPR000626 GO:0005515
Adu03g03798 249 Gene3D - 173 249 - -
Adu03g03798 249 Gene3D - 97 172 - -
Adu03g03798 249 Gene3D - 15 96 - -
Adu03g03798 249 SUPERFAMILY Ubiquitin-like 19 96 IPR029071 -
Adu03g03798 249 ProSitePatterns Ubiquitin domain signature. 47 72 IPR019954 -
Adu03g03798 249 SMART ubq_7 173 244 IPR000626 GO:0005515
Adu03g03798 249 SMART ubq_7 21 92 IPR000626 GO:0005515
Adu03g03798 249 SMART ubq_7 97 168 IPR000626 GO:0005515
Adu03g03798 249 ProSitePatterns Ubiquitin domain signature. 123 148 IPR019954 -
Adu03g03798 249 ProSiteProfiles Ubiquitin domain profile. 97 172 IPR000626 GO:0005515
Adu03g03798 249 PRINTS Ubiquitin signature 31 51 IPR019956 -
Adu03g03798 249 PRINTS Ubiquitin signature 52 72 IPR019956 -
Adu03g03798 249 PRINTS Ubiquitin signature 73 94 IPR019956 -
Adu03g03798 249 ProSiteProfiles Ubiquitin domain profile. 21 96 IPR000626 GO:0005515
Adu03g03798 249 PANTHER UBIQUITIN 13 20 226 - -
Adu03g03798 249 ProSitePatterns Ubiquitin domain signature. 199 224 IPR019954 -
Adu03g03798 249 CDD Ubl_ubiquitin 21 96 - -
Adu03g03798 249 SUPERFAMILY Ubiquitin-like 171 248 IPR029071 -
Adu03g03798 249 CDD Ubl_ubiquitin 97 172 - -
Adu03g03798 249 SUPERFAMILY Ubiquitin-like 96 172 IPR029071 -
Adu03g03798 249 CDD Ubl_ubiquitin 173 248 - -
Adu03g03798 249 Pfam Ubiquitin family 175 246 IPR000626 GO:0005515
Adu03g03798 249 Pfam Ubiquitin family 23 94 IPR000626 GO:0005515
Adu03g03798 249 Pfam Ubiquitin family 99 170 IPR000626 GO:0005515
Adu03g03798 249 PANTHER UBIQUITIN 172 248 - -
Adu03g03798 249 PANTHER UBIQUITIN 20 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g03798 Adu-Chr3 126664812 126666687 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g03798 21 97 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 98.701 6.02e-49 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g03798 - K08770 han:110936586 448.743