Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g03788 ATGGCTGGTGATGAAGTAGGTAGTAGCTCTGAGTGGAGCTTTGAGCAGGATAAAGCATTTGAGAATGCCTTGGGTACTTACCCTGAGGACGATCCGGATCGATGGGAGAAGATTGCTGCCGATGTAACTGGGAAGACTTTGGAAGAGGTTAAACAACACTATGAGCTTCTGGTTGATGATGTCAACTTAATTGAATCTGGGCGTGTGACTCTACCAGCTTATAATTCTACTTCAGAATGCTCAACAGGCAATGCTAGTGACGAAGGAGGTGGCAAGAAGGGTGGCCAACCTTGGAATTCGAACAGCGAGTCTAATAATGGATCTAAGTCTTCAAGATCAGATCAGGAACGGCGTAAGGGTATTGCTTGGACAGAAGATGAACACAGGTTATTTCTTCTTGGATTGGAGAAGTATGGAAAGGGTGACTGGCGAAGTATATCGAGAAATTTTGTGGTGACAAGAACTCCTACACAAGTAGCAAGCCACGCCCAAAAATATTTCATTCGTTTGAACTCAATGAACAAAGATCGAAGGCGATCAAGCATACACGATATCACCAGTGTAAACAATGGAGACGTGTCGGCACCTCAAGGACCAATCACCGGTCAAACGAATGGTTCAGCTGGAAACTCCACCGGAAAGTCACCAAAACAAGGCCCTCCAACCCCAACCGGTCCTCCAACTGTAGGACTGTTTGGTGCTCCAACCATTGGACAACCGATAGGAGGAGGACCCCTTGTGTCTGCAGTTGGCACGCCAGTGAATCTTACTCCCCCGGCACACATGGCTTATGGTGTCCGAGCTCCGGTTCCCGGGGCTCCAATGAACATGGGTCCTGTGGCATACCCCATGCCCCCAACATCTCATAGGTGA 873 0.4834 MAGDEVGSSSEWSFEQDKAFENALGTYPEDDPDRWEKIAADVTGKTLEEVKQHYELLVDDVNLIESGRVTLPAYNSTSECSTGNASDEGGGKKGGQPWNSNSESNNGSKSSRSDQERRKGIAWTEDEHRLFLLGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRRRSSIHDITSVNNGDVSAPQGPITGQTNGSAGNSTGKSPKQGPPTPTGPPTVGLFGAPTIGQPIGGGPLVSAVGTPVNLTPPAHMAYGVRAPVPGAPMNMGPVAYPMPPTSHR 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g03788 290 CDD SANT 11 58 IPR001005 -
Adu03g03788 290 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 114 171 IPR017930 -
Adu03g03788 290 ProSiteProfiles SANT domain profile. 123 171 IPR017884 -
Adu03g03788 290 SMART sant 119 169 IPR001005 -
Adu03g03788 290 SMART sant 8 60 IPR001005 -
Adu03g03788 290 MobiDBLite consensus disorder prediction 177 236 - -
Adu03g03788 290 Gene3D - 10 57 - -
Adu03g03788 290 ProSiteProfiles Myb-like domain profile. 115 167 IPR001005 -
Adu03g03788 290 SUPERFAMILY Homeodomain-like 10 66 IPR009057 -
Adu03g03788 290 ProSiteProfiles Myb-like domain profile. 10 58 IPR001005 -
Adu03g03788 290 MobiDBLite consensus disorder prediction 95 109 - -
Adu03g03788 290 MobiDBLite consensus disorder prediction 184 218 - -
Adu03g03788 290 SUPERFAMILY Homeodomain-like 117 172 IPR009057 -
Adu03g03788 290 CDD SANT 122 167 IPR001005 -
Adu03g03788 290 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 119 169 IPR006447 GO:0003677
Adu03g03788 290 MobiDBLite consensus disorder prediction 1 32 - -
Adu03g03788 290 Pfam Myb-like DNA-binding domain 122 167 IPR001005 -
Adu03g03788 290 Gene3D - 121 173 - -
Adu03g03788 290 PANTHER HOMEODOMAIN-LIKE TRANSCRIPTIONAL REGULATOR-RELATED 7 280 - -
Adu03g03788 290 MobiDBLite consensus disorder prediction 74 120 - -
Adu03g03788 290 PANTHER TRANSCRIPTION FACTOR KUA1 7 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g03788 Adu-Chr3 126605846 126608796 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Adu03g03788 Myb_DNA-binding 2.1e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g03788 - - gmx:100797809 450.284