Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g03748 ATGTCATCAAGTAGAACACTAGTGAGGCATGTGTTTGATGTTCCTGAAGAGATATGTTACGTGCAATGTGGATTGTGTTCATCCATTTTAGTGGTGTGTGTGCCATGCACCAGCATGTCAATGGCGGTTCTCAGTGTCAGATGCGGCCACTGCTCAACCATTCTCTCTGTCAACATGATCAAACCTTCCTTTCTTCCTTCTCTGCTAAATATTGAGGATGGCAACAAGATTAGCACTTTGAACGCTCATAATAATTATAATGATTGTGAGGAAGCCAATAATAATGTAACTACTCCATTCACAACTGATTCTGCTCCCAATAAACCGCCAGAAAAGAAACAGCGAACACCGTCGGCTTATAACTGTTTCATCAAAGAAGAGATTAAGAGGCTTAAAGCTGAAAACCCTGAAATGGCTCACAAGGAAGCTTTCAGTACTGCTGCAAAAAATTGGGCCAATTTTCCCCCATCTGAGTATAGAAGAGGAGATGATGAAATTGACGAAGAGCGCTCTACCCACACACCCCAACTTGCTAATAATAATAAGGTGAATATTGAAGAAGGTGAAGATCGACGTGGAAGAAAGAATCTAGAGAATTCTATGATAAATGCACCGTTCAAGTGA 624 0.4103 MSSSRTLVRHVFDVPEEICYVQCGLCSSILVVCVPCTSMSMAVLSVRCGHCSTILSVNMIKPSFLPSLLNIEDGNKISTLNAHNNYNDCEEANNNVTTPFTTDSAPNKPPEKKQRTPSAYNCFIKEEIKRLKAENPEMAHKEAFSTAAKNWANFPPSEYRRGDDEIDEERSTHTPQLANNNKVNIEEGEDRRGRKNLENSMINAPFK 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g03748 207 MobiDBLite consensus disorder prediction 155 207 - -
Adu03g03748 207 MobiDBLite consensus disorder prediction 93 107 - -
Adu03g03748 207 PANTHER AXIAL REGULATOR YABBY 4 1 170 - -
Adu03g03748 207 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 113 181 IPR009071 -
Adu03g03748 207 MobiDBLite consensus disorder prediction 93 116 - -
Adu03g03748 207 Gene3D High mobility group box domain 98 182 IPR036910 -
Adu03g03748 207 SUPERFAMILY HMG-box 102 175 IPR036910 -
Adu03g03748 207 Pfam YABBY protein 15 156 IPR006780 GO:0007275
Adu03g03748 207 PANTHER PROTEIN YABBY 6-RELATED 1 170 IPR006780 GO:0007275
Adu03g03748 207 MobiDBLite consensus disorder prediction 158 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g03748 Adu-Chr3 126067310 126069035 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g03748 6 162 C2C2-YABBY Transcription Factor Family AT1G23420 49.153 5.46e-52 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Adu03g03748 YABBY 4.6e-47 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g03748 K25796 - gmx:100804172 210.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu03g03748 03 126067310 126069035 Adu03g03748 03 126067310 126069035 ECH
Adu05g01444 05 23060756 23063008 Adu03g03748 03 126067310 126069035 PCT