Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g03680 ATGCCACCTGGTGATACACCTTCGAAGGCTACTGCAACAACAAAAACATGCTCATCACCTAATACAAAAGATCATGAGAATTCCGACCAGCAAGGTGGAGGTGGTGGCCGGAAAACCACAAAGGCAGCAGCAGCAGAACAAGGACTAAAGTGCCCTCGATGTGACTCACCCAACACCAAATTCTGCTACTATAACAATTACAGCCTTACGCAGCCACGCCACTTCTGCAAGACTTGCCGCCGCTACTGGACAAAAGGCGGAGCCCTGCGCAACGTCCCCATAGGCGGTGGATGCCGCAAAAGCAAGAAAGGGAAGCCCTCGTCGTCCTCCTCCATCTCTTACTCAAGGGCATTTTCATGCGACTCCTCCAGGGACTCTGGTTCTTCCTCTGACCTCGCTGGCCTTAGGTACCTCCATGGGCTTTCTTCTCCTCCCATGGATTTTCAACTTGGAGGGTTAACTTTCCCTGTCCCTTCTAGGCTGCAACATCATCATCAACCTCCAATGGCTACTACAGCTGCTTTCTATAACAACCAGTTCTCTTCTTTTGGGGATGTTGTTCCGGGAGCTACTACTACTGCTTCTGCTTCTGCTTCTGCTTCTTCCGCCATTGATTATCCCTCGGGGAGTTCTTTGATTGGTCTGAACTATCCGTTTTGTTCTTCAGATGGAAGCGGTAGTAATGGTGCAATAATCCATGGCGGTGTGAACAATAACTTTGAGGGTAGTAGTAGCCTTGCGTCTTCGATTGAGTCGTTGAGTTCCTTGAACCAAGACTTGCATTGGAAGCTTCAGCAGCAAAGGTTGGCAATGCTCTTTGTGGGAGACAACCACCAGAAAGAAGATCACAACAACAGCAACCGCAACGGCAACGTTTCTTTTTCTCCCGTggttgttgatcttgatcatcatcatcatcagcagcagcagcagcagcagcagAGACCCCAACCAATTTTATTTGAGAATCTTGAAATTTCAAAGGCAGGTGCAGGTGCTACTACTGTAGATGCAGATACTAGAGCCACAGAATGGTTCTTCGGGAATTCTCATGCTCCTACTCCAACGACGACTACCAGCAGCGGTTGCAATGGCCATGAAGATAGCTGGATGATGGGCAGCAGCGGTGTCCATGGTTGGCCTGATTTGCAACCGCACCCGCAGCAACAGTACAGTTCTTTGCCCTAG 1188 0.4731 MPPGDTPSKATATTKTCSSPNTKDHENSDQQGGGGGRKTTKAAAAEQGLKCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKSKKGKPSSSSSISYSRAFSCDSSRDSGSSSDLAGLRYLHGLSSPPMDFQLGGLTFPVPSRLQHHHQPPMATTAAFYNNQFSSFGDVVPGATTTASASASASSAIDYPSGSSLIGLNYPFCSSDGSGSNGAIIHGGVNNNFEGSSSLASSIESLSSLNQDLHWKLQQQRLAMLFVGDNHQKEDHNNSNRNGNVSFSPVVVDLDHHHHQQQQQQQQRPQPILFENLEISKAGAGATTVDADTRATEWFFGNSHAPTPTTTTSSGCNGHEDSWMMGSSGVHGWPDLQPHPQQQYSSLP 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g03680 395 MobiDBLite consensus disorder prediction 1 41 - -
Adu03g03680 395 MobiDBLite consensus disorder prediction 347 395 - -
Adu03g03680 395 MobiDBLite consensus disorder prediction 103 126 - -
Adu03g03680 395 MobiDBLite consensus disorder prediction 347 368 - -
Adu03g03680 395 ProSiteProfiles Zinc finger Dof-type profile. 49 103 IPR003851 GO:0003677|GO:0006355
Adu03g03680 395 MobiDBLite consensus disorder prediction 94 126 - -
Adu03g03680 395 Pfam Dof domain, zinc finger 47 103 IPR003851 GO:0003677|GO:0006355
Adu03g03680 395 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 26 370 IPR045174 GO:0003700|GO:0006355
Adu03g03680 395 ProSitePatterns Zinc finger Dof-type signature. 51 87 IPR003851 GO:0003677|GO:0006355
Adu03g03680 395 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN-RELATED 26 370 - -
Adu03g03680 395 MobiDBLite consensus disorder prediction 7 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g03680 Adu-Chr3 125071297 125072574 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g03680 39 395 C2C2-Dof Transcription Factor Family AT5G65590 38.781 1.20e-62 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Adu03g03680 zf-Dof 2.3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g03680 - - ahf:112791714 660.218