Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g03676 ATGACTATGCAACTCTGCTTCTTCTTCTTGTTGTTGCTTGGTGCCTCCTCTTCTGATAAGACAACATTAAGAAAAAGTTTAAGAAAGAACAACAGTATACAAACACCATCATCTTCCAATTTTGCAGTTAAGCTTAATGAAGAAAATCATCAGCAGTTGGTGATTGACAACGGTATCGTTTCAGTAACTTTATCTATACCAGAAGGTTATGTCATTGGTGTATCCTATAACGGAATTGAGAATGTACTTGAACCTCAAAATGAAGAACAAGATAGAGGGTACTTCGATGTTGTTTGGAATGAACCAGGAAAACCCAGTATCTTTCAAAGAATCCACGGGACAAATTTTTCGGTTATAGCTTCTGACGAGAATATGGTGGAGCTTTCATTTTTAAGGGCATGGACAGCTTCCATGGAGGGCTCAAATGTCCCCATTAATATAGACATAAGGTACATTTTGCGAAGAGGTGATTCAGGATTTTATTCATATGCAATATTTGATCGGCCTGATGAAGGATTTCCAGGCGTGGAGGTTGATCAAATTAGATTTGTTTATAAGCTCTTGAAAGATAGATTCAGCTATATGGCTCTATCTAGTACAAGACAAAGAACTATGCCAACAATGAGAGACAGAGAAACAGGACAAATCCTGGCTTACCCTGAAGCCGTTCTTTTAACGAAACCAAGCAACCCTCAATTTAGAGGAGAGGTGGATGACAAATACCAATACTCATGTGAGAACAGTGAAAACAATGTTCATGGATGGATTAGCCTTCAGCCTGATGAACCGGTGGGTTTCTGGATAATTACTCCTTCCAATGAGTTCCGCAATGGTGGCCCCATCAAGCAAGACCTCACTTCTCACGTTGGCCCCTTCACTCTTTCTATGTTTGTCAGCACTCACTATGCCGGCAAAGAAGTAACCATGTCTTTCCAACAAGGCGACACTTATAAAAAGGTTTTTGGACCTGTTTTTGTCTATCTTAACTCTGCTTCAATCTCCGATGATCCCTTGTCTCTCTGGTCAGATGCTATTAACCAGCTCTCCAAAGAAGTCAAAGCCTGGCCTTACGATTTTCCACTATCACCAGATTACTTTCCACCCGATCAACGAGGAATAGTGTTAGGAAGATTGTTAGTCCAAGATTGGTGTGTTAAGGGTGGGAGATTGCAGTATGCTAACAATGCTTATGTTGGCCTAGCATTACCTGGAGATGCAGGATCATGGCAGAAAGAGAGCAAGGGTTACCAATTTTGGACTCAAGCTGATTCCAAAGGATACTTTGCAATTAAAAATGTTGTACCTGGGGATTATAACTTGTATGCTTGGGTACCTGGCTTTATTGGTGATTACAAATATAATTCTACAATCACAATAACACCAGGAGGAGTCATCAAATTGGATCAACTTGTATATAGTCCTCCTAGAAATGGACCAACCATATGGGAAATTGGTATCCCAGACAGAACAGCTGTAGAGTTCTACGTACCAGATCCTTACCCTACTCTCATGAACAAATTATACACTGAACAACGCAAAGACAAGTTTAGGCAATATGGGTTGTGGGAACGTTATTCTGACATGTATCCAAATGAAGATCTTGTTTACACTGTTGGTGTCAACAAGTACAATAGGGATTGGTTTTATGCCCATGTTACAAGGAATATGGGGAATAAGACATACGAACCAACAACGTGGCAAATTATATTTGAACATCGCAATGACATAATAGAAGGGAATTACACACTACAATTAGCCCTAGCATCTGCTGCTGATGCTGAACTTCAGGTTCGATTCAATGATCCAAGTGTTTATCCTGCCCACTTTGGAACAGGGCCAATAGGAGGAGATAATGCCATAGCAAGACATGGAATCCATGGATTGCATAGGCTGTATAGTATTGATGTGCCTAGTCATCATTTTGTGAAAGGAAAGAATATCATTTATCTGAGACAGTCTAGAGCTATAAACCAATTTCAAGGAGTTATGTATGATTATATCCGTTTAGAAAGACCACCAAACTCAACCAATTGA 2034 0.3992 MTMQLCFFFLLLLGASSSDKTTLRKSLRKNNSIQTPSSSNFAVKLNEENHQQLVIDNGIVSVTLSIPEGYVIGVSYNGIENVLEPQNEEQDRGYFDVVWNEPGKPSIFQRIHGTNFSVIASDENMVELSFLRAWTASMEGSNVPINIDIRYILRRGDSGFYSYAIFDRPDEGFPGVEVDQIRFVYKLLKDRFSYMALSSTRQRTMPTMRDRETGQILAYPEAVLLTKPSNPQFRGEVDDKYQYSCENSENNVHGWISLQPDEPVGFWIITPSNEFRNGGPIKQDLTSHVGPFTLSMFVSTHYAGKEVTMSFQQGDTYKKVFGPVFVYLNSASISDDPLSLWSDAINQLSKEVKAWPYDFPLSPDYFPPDQRGIVLGRLLVQDWCVKGGRLQYANNAYVGLALPGDAGSWQKESKGYQFWTQADSKGYFAIKNVVPGDYNLYAWVPGFIGDYKYNSTITITPGGVIKLDQLVYSPPRNGPTIWEIGIPDRTAVEFYVPDPYPTLMNKLYTEQRKDKFRQYGLWERYSDMYPNEDLVYTVGVNKYNRDWFYAHVTRNMGNKTYEPTTWQIIFEHRNDIIEGNYTLQLALASAADAELQVRFNDPSVYPAHFGTGPIGGDNAIARHGIHGLHRLYSIDVPSHHFVKGKNIIYLRQSRAINQFQGVMYDYIRLERPPNSTN 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g03676 677 Pfam Polysaccharide lyase family 4, domain II 394 466 IPR029413 -
Adu03g03676 677 CDD RGL4_C 482 670 - -
Adu03g03676 677 Gene3D - 370 468 - -
Adu03g03676 677 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 46 674 - -
Adu03g03676 677 CDD RGL4_N 52 332 - -
Adu03g03676 677 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 46 674 - -
Adu03g03676 677 Pfam Rhamnogalacturonate lyase family 38 237 IPR010325 -
Adu03g03676 677 Gene3D - 477 670 - -
Adu03g03676 677 SUPERFAMILY Galactose-binding domain-like 477 670 IPR008979 -
Adu03g03676 677 CDD RGL4_M 370 467 IPR029413 -
Adu03g03676 677 SUPERFAMILY Starch-binding domain-like 366 469 IPR013784 GO:0030246
Adu03g03676 677 SUPERFAMILY Galactose mutarotase-like 48 336 IPR011013 GO:0003824|GO:0005975|GO:0030246
Adu03g03676 677 Gene3D - 42 348 IPR014718 GO:0030246
Adu03g03676 677 Pfam Polysaccharide lyase family 4, domain III 480 669 IPR029411 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g03676 Adu-Chr3 125022865 125029599 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g03676 39 674 Polysaccharide Lyase AT1G09910 55.172 0.0 716
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g03676 K18195 - gmx:100776664 1081.24