Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g03635 GTACATAGTGTATGCGCAAGTCCCACTTTGTCACTCTCAGAAAGGTGTTTTTCTGATGGCTTATCATATACATCTGACAAGTTTTATCCATCAACACCTTTCCTTTCCAGTGCAAATGACATGATTGATAATTCTGTCCCAAGTTCTCCATATATTGATCCAGATACTCCTATTAAGATTGAAACAACACGTCTCAACAAGGAGCACAAGAATTTGTCCTGCAGGTCTATGTTGAACCCCGCCACACCACTCATAAGAAACAACAATGCATTGAAGGATGTAATGGTTTGGGGTGGAGGGATTGGAGGTCTTGTAGGGATTGTAAATGAAAGGTTTGTGAACCAACATGGAATATATTCTTTAGTTCCAAAGTTGCTAGAATCCACTATGATGTTAGATGTACAAAATATAGCTTTAGGAGGAAAACATGCTGCCTTGGTAACAAAAGAAGGGGAAGTGTTTTGTTGGGGTCAAGGGAAGTGGGGAAGGTTGGGGCAAAAAATTGATATAGACACTAGCTCCCCGAAAATAGTTGATTCTCTTAATGGTGTTCATATAAAACAGGTAACCTGTGGTGAGTATCATACATGTGCTTTGACAGATTCTGGTGAAGTATATGCATGGGGGAATGATGTTTGTTGTTCGGATTTGGTTAATGAAGGCCGGATAAAAAATCAATGGATACCACATAAACTTTCAGGTCCTCTAGATGGTATTAGCATTTCAAGCATTGCTTGTGGAGAATGGCACACTGCCATTGTCTCTAGCTGTGGAAAATTATTTACATATGGAGATGGTACCTTCGGAGTTCTTGGCCATGGCAATCTTCAGAGCTGTTCTCGACCGAAACATGTTGAGTCTCTTAGTGGTCTAAAGGTGAGGTCTGTTGCTTGTGGTTCATGGCATACAGCTGCAATTGTGGAAGTCATGGTTGATCACTTTCGGTATAATACTCCTACAGGCAAGCTGTTTACTTGGGGAGATGCAGATGAAGGGAGGCTTGGTCATGCAGATAATGGAAACAAGCTTGTTCCGACTTGTGTTTCGCAACTCGTTGACTATGATTTTGTTCAAGTAAGTTGTGGAAGAATGTTGACTGTAGCACTTACTAATATGGGGAAGGTATTTGCAATGGGAAGCGCGAGATATGGACAGCTCGGAAATCCTCACGCCAGAGATAGAGCAGTAATGGTTGAAGGACAGCTTAAACAAGAGTTTGTTAAAGTGATTTCGGCTGGTTCATATCATGTTGCTGTTTTGACTTCGGCCGGGAGTGTCTATACATGGGGCAAAGGTGAAAATGGTCAACTTGGACTAGGTGATGCCGAAGACAGGTACACGCCTTCTTTTGTTGAGGCTCTAAGAGACAGGCAAGTAGAAACAATAACTTGTGGATCAAGTTTCACGGCTGCAATCTGTTTGCACAGACCGATTTCTATTAGTGACCAGTCAGCTTGTAGTGGGTGTAGGCTGCCGTTTGGATTCACAAGGAAGAAGCATAACTGTTATGATTGTGGCCTTCATTTCTGCCGTGCTTGTAGTAGTAAAAAGGTTATAAATGCTTCTCTAGCCCCGAGTAAGAGCAAGGCCTTTCGAGTTTGTGATCAGTGCTATGATAGAAGGCAAGGAAGTACACATTCAGCAGTGGCTTTGAAGTCTAGAAATTGCAACTCCCAGCAGCTGCACAGACTTCCTGATCTGACTGAAGATAGAGGAGAGACAACTATGGCACAGGGTCCTCTCTTGACGCTCGGCCAATCATGTTATAGGAAAAGCATGCCCAGTGGAAGAAAGGACTGGAAAAACCAACAAGAGAGCCAGCAGCATTTAGAAGATAGTTCTTCTTCTATGTTAGGTGGGATGCCCCAATGGGGGCAAGTTCCATGCCCTGCCCAATTTAGAATCAATTGTAAAGAAAATTTGGCTGGGCATGTTTCTTCGTCGAAAAATAAAGTAGCTACTGTTGCCCCACCAAATATAGAATCTCCGGCGGCAGCATTCAACTTCTCTAGTGCAGAGTCAGATACAACAAAGTCTGATAAGATGCTCATTGAAGAAGTTCAGAGGCTGAGAGCTGAGTTAAAGAGACTTGAAGAACAGTGTGAACTCAAAAACCATAAGATACAAGAGTGCCAACAGAAAATTGAGGAGAGTTGGTTTGTAGCAAAGGAGGAAGCTGCTAAGTCCAAAGCAGCAAAAGAGGTCATAAAAGCTTTGGCTTTAAGGCTTCATACAATATCAGGAAAAGAGAATGCTGGACAAGAAGGAAAAGTTGGGATACATGATTGCATGTCTAATTTGGCACCCATACATATAGATATGAATAGTCCTAGGGATGGCAACATGGACAGTCTATCTAATTCCCCTATAGTATTCTCAGACACATTGAAATCAAAACTTGGGAGAAACATGTTACTCAAGAATGATAGAGTGACGGAAAATTCTAGCATCGCTAAACCACAGTCACAGCAAGACAATACTGACAGCATGAAGGTTGAATGGGTAGAACAGTATGAGCCTGGTGTTTACATCACATTCACAACCTTGCCATGTGGGAAAAAGGGCCTTAAAAGGGTCAGATTCAGCCGGAAACGATTCTCGGAGAAGGAAGCAGAACGGTGGTGGGAAGAGAATCAATGCAGAGTGTACCATAAATATGAGATTGAAGGCCCAAGCAACCCCAACATTCCACCCTCCTCTTCCCTCACCTATTCTCTCGCTCTCTCTCATTTTTCCACATTAAGGGAAGGGAGAGCATTATTATTGCATCATTGGAGATCATCGCTTGGATTATTGAGGTTCCACCCTACAGACGAAGAACTGGTTGCTTATTACCTTAAAAGGAAGATCAATGGCCGTAAAATTGATCTCGAGATCATTCCTGAAGTTGATCTATACAAGTGCGAACCGTGGGACTTGCCAGGGAGGTCGTTGTTGCCGGGTAAGGATTTGGAGTGGTACTTCTTTAGCCCTCGGGACAGGAAGTATCCAAATGGGTCAAGAACCAACAGAGCAACGAAATGCGGGTACTGGAAGGCCACTGGAAAGGACAGGAAGGTAAATTCGCAGAGCCGCGCCGTAGGGATGAAGAAAACCCTTGTGTACTACCGAGGCAGGGCGCCTCACGGGTCTCGCACTGGTTGGGTCATGCACGAGTACCGTCTTCATGAGAGGGAATGCGAAACCAATGCTGCTTCTGGCTTGCAGGATGCCTATGCTCTTTGCCGTGTCTTCAAGAAGGCGGCGGTCATACTCCCCAAAGTGGCAGATCACTATGCTGGTAACAATATCATGATGATGACAACTGATTCTCAAGGAACACCCCAAGTCTTTGACACCATGCCTTGGGATCATCATATTGGGCATAATGGTAAATGCCCACACTTATCTCAGGATCCATTCCTCAATAACCTTCCATCTTCATCATCCTCCTCATTTCCTCACTATGGAGCCCTAACTTACTCTCCATCTAAGGTGGATGTAGCACTAGAGTGTGCAAGGATGCAGCACAGTTTTTCCATGCCTCCATTGGAGGTAGTGGAGGAATTCCCTAATGTGGGAATTTCAGAGCTCAACATTATGACACGTGGCACCACTTCAATGTGTGGAGGAAGCATGAACAATAACAATGAATCGGATATCTTGCAACAGATTCTTTCACTTGCTAATGCTAATGTTTCTTCCCATGAATTCACAAATCAATCAAACCATTCACACACATTATTGGCTGGCAACAATAATGCAAATTATTCTGCTCCTCATCATCACGAACATGATTTTGCTTTTAATGCTGGCACAAGTTACACTAATCACGCCGTAAATGATATGAACCCCATGAGATATGAAATCCAACATCAAAACCTAAGAACAATAGAGATTGGAGATCTTGAAAGCGAGTTCAAGAGCTTTATGGAAGAGCAAAAGACGGTTCCGATTGAGGATATATCAAGCTTCCAAACAAACATACAAGAAAATGAGGTTCAAGGTATATTAATTAGCCAACAAAGCTAG 4011 0.4321 VHSVCASPTLSLSERCFSDGLSYTSDKFYPSTPFLSSANDMIDNSVPSSPYIDPDTPIKIETTRLNKEHKNLSCRSMLNPATPLIRNNNALKDVMVWGGGIGGLVGIVNERFVNQHGIYSLVPKLLESTMMLDVQNIALGGKHAALVTKEGEVFCWGQGKWGRLGQKIDIDTSSPKIVDSLNGVHIKQVTCGEYHTCALTDSGEVYAWGNDVCCSDLVNEGRIKNQWIPHKLSGPLDGISISSIACGEWHTAIVSSCGKLFTYGDGTFGVLGHGNLQSCSRPKHVESLSGLKVRSVACGSWHTAAIVEVMVDHFRYNTPTGKLFTWGDADEGRLGHADNGNKLVPTCVSQLVDYDFVQVSCGRMLTVALTNMGKVFAMGSARYGQLGNPHARDRAVMVEGQLKQEFVKVISAGSYHVAVLTSAGSVYTWGKGENGQLGLGDAEDRYTPSFVEALRDRQVETITCGSSFTAAICLHRPISISDQSACSGCRLPFGFTRKKHNCYDCGLHFCRACSSKKVINASLAPSKSKAFRVCDQCYDRRQGSTHSAVALKSRNCNSQQLHRLPDLTEDRGETTMAQGPLLTLGQSCYRKSMPSGRKDWKNQQESQQHLEDSSSSMLGGMPQWGQVPCPAQFRINCKENLAGHVSSSKNKVATVAPPNIESPAAAFNFSSAESDTTKSDKMLIEEVQRLRAELKRLEEQCELKNHKIQECQQKIEESWFVAKEEAAKSKAAKEVIKALALRLHTISGKENAGQEGKVGIHDCMSNLAPIHIDMNSPRDGNMDSLSNSPIVFSDTLKSKLGRNMLLKNDRVTENSSIAKPQSQQDNTDSMKVEWVEQYEPGVYITFTTLPCGKKGLKRVRFSRKRFSEKEAERWWEENQCRVYHKYEIEGPSNPNIPPSSSLTYSLALSHFSTLREGRALLLHHWRSSLGLLRFHPTDEELVAYYLKRKINGRKIDLEIIPEVDLYKCEPWDLPGRSLLPGKDLEWYFFSPRDRKYPNGSRTNRATKCGYWKATGKDRKVNSQSRAVGMKKTLVYYRGRAPHGSRTGWVMHEYRLHERECETNAASGLQDAYALCRVFKKAAVILPKVADHYAGNNIMMMTTDSQGTPQVFDTMPWDHHIGHNGKCPHLSQDPFLNNLPSSSSSSFPHYGALTYSPSKVDVALECARMQHSFSMPPLEVVEEFPNVGISELNIMTRGTTSMCGGSMNNNNESDILQQILSLANANVSSHEFTNQSNHSHTLLAGNNNANYSAPHHHEHDFAFNAGTSYTNHAVNDMNPMRYEIQHQNLRTIEIGDLESEFKSFMEEQKTVPIEDISSFQTNIQENEVQGILISQQS 1336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g03635 1336 SMART fyve_4 474 543 IPR000306 GO:0046872
Adu03g03635 1336 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 296 306 IPR000408 -
Adu03g03635 1336 Pfam FYVE zinc finger 482 540 IPR000306 GO:0046872
Adu03g03635 1336 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 203 257 IPR000408 -
Adu03g03635 1336 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 424 475 IPR000408 -
Adu03g03635 1336 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 258 309 IPR000408 -
Adu03g03635 1336 SUPERFAMILY FYVE/PHD zinc finger 479 550 IPR011011 -
Adu03g03635 1336 Pfam Regulator of chromosome condensation (RCC1) repeat 202 253 IPR000408 -
Adu03g03635 1336 Pfam Regulator of chromosome condensation (RCC1) repeat 424 472 IPR000408 -
Adu03g03635 1336 Pfam Regulator of chromosome condensation (RCC1) repeat 321 369 IPR000408 -
Adu03g03635 1336 Pfam Regulator of chromosome condensation (RCC1) repeat 258 306 IPR000408 -
Adu03g03635 1336 Pfam Regulator of chromosome condensation (RCC1) repeat 150 199 IPR000408 -
Adu03g03635 1336 Gene3D NAC domain 937 1083 IPR036093 GO:0003677|GO:0006355
Adu03g03635 1336 ProSiteProfiles NAC domain profile. 928 1080 IPR003441 GO:0003677|GO:0006355
Adu03g03635 1336 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 92 150 IPR000408 -
Adu03g03635 1336 SUPERFAMILY NAC domain 932 1080 IPR036093 GO:0003677|GO:0006355
Adu03g03635 1336 Coils Coil 680 714 - -
Adu03g03635 1336 SUPERFAMILY RCC1/BLIP-II 92 476 IPR009091 -
Adu03g03635 1336 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 480 542 IPR017455 -
Adu03g03635 1336 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 1 889 - -
Adu03g03635 1336 Pfam Transcription factor regulating root and shoot growth via Pin3 832 886 IPR013591 -
Adu03g03635 1336 Gene3D - 311 481 IPR009091 -
Adu03g03635 1336 MobiDBLite consensus disorder prediction 592 621 - -
Adu03g03635 1336 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 373 423 IPR000408 -
Adu03g03635 1336 CDD FYVE_like_SF 485 538 - -
Adu03g03635 1336 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 321 372 IPR000408 -
Adu03g03635 1336 PRINTS Chromosome condensation regulator RCC1 signature 362 380 IPR000408 -
Adu03g03635 1336 PRINTS Chromosome condensation regulator RCC1 signature 203 219 IPR000408 -
Adu03g03635 1336 PRINTS Chromosome condensation regulator RCC1 signature 153 169 IPR000408 -
Adu03g03635 1336 PRINTS Chromosome condensation regulator RCC1 signature 93 109 IPR000408 -
Adu03g03635 1336 PRINTS Chromosome condensation regulator RCC1 signature 244 260 IPR000408 -
Adu03g03635 1336 PRINTS Chromosome condensation regulator RCC1 signature 260 274 IPR000408 -
Adu03g03635 1336 PRINTS Chromosome condensation regulator RCC1 signature 419 440 IPR000408 -
Adu03g03635 1336 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 482 551 IPR013083 -
Adu03g03635 1336 ProSiteProfiles BRX domain profile. 832 887 IPR013591 -
Adu03g03635 1336 Pfam No apical meristem (NAM) protein 932 1055 IPR003441 GO:0003677|GO:0006355
Adu03g03635 1336 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 151 202 IPR000408 -
Adu03g03635 1336 Gene3D - 218 309 IPR009091 -
Adu03g03635 1336 Gene3D - 82 217 IPR009091 -
Adu03g03635 1336 MobiDBLite consensus disorder prediction 607 621 - -
Adu03g03635 1336 PANTHER F12P19.9 PROTEIN 1 889 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g03635 Adu-Chr3 124470679 124479875 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g03635 932 1326 NAC Transcription Factor Family AT1G65910 47.196 1.60e-98 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Adu03g03635 NAM 4.8e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g03635 - - adu:107481014 1804.26