Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g03607 ATGAAGAGCATCATATCGAAGAACCCTAACCTCTCTTCATTGTGCACTCTGCGAAGAACGTCGTCGGCGCGCGTGATGCTTCTGTCGGCAATCCCTCTTCTGGCACCCCTCACTGTGGCTCACCTCTCTCACGGCTGGTCTCGCCGTCGACCTCTCTCTCTCCGGTTTCACGCTTCTCTCGCGGCTGTTTCGGACTTAAGCTTGTCGCAAGCTCTGTCGCTCTCGGTCACCATCGCAAGCTCGTCTTCTTGCTTAGGCTGTCAACGCTTCCTTTGTCATGAGTTGGTTCGTGGGGGTTCTATTCCCTGGTGGCAATTGCTGAGAGGAAGCATAGAGAGAAGCTCAGCCAACGGTTCATTGCTTTATCTGCCCTTGTTCCTGCCTGTAAAAGTTTCAAAAGAAAGCAGTTATAGTTCAGATGACAGTGATAAGGAAGAAGAAAAACCTTCTAAAACTCCTCAGAAAAGTGCTAAGGATGTCGAGATGGTTGATGCTGACTCAGCAAAGAAAGTTTCTAAAACCCCTTCTACACCTAGTGTTGCAATAGGTGGATCAAAGACACTATTTGTTGGAAACCTGTCATTTAGTTTGCAACGATCTGACTTCGAGGAGTTTTTCAAAGATTGTGGAGAAGTAGTTGATGTTCGTTTTTCTGTTGACGATGCTGGGAGGTTTAAACGCTTTAGACATGTTGAGTTTGCTATTGCAGAGGCAGCACAAAATGCTCTTGAATTGAATGAGCATGAGTTGTTGAATCATCTTGTTAGGCTTGATTTAGCTCGTGAAAGAGGTTCATATATCCCTGGTGGCAATTTCAGCAATTCCTTCCAGAAAGGTGATCAGCATCAAACTGGTCAAACTATATTCATAAGGGGTTTTGATAAATCTCTTGGAAAAGAGATAAGAGCTAGCCTAAATGAGCATTTTCGTTCCTGCAGGGAGATCTCGAGGGTGTCAGTCCCAAAAGATTTTGAGTCTGGAGGTCCTCAATGCAAATTGACACCAGGTGTAATTTACAGTTTTGCCTACATCGACTTCAAGGATTTTTCTAGCATGAAAAAAGTTCTAGAACTCAATGAAACTGAACTTGCTGGTGGTTATTACCTCTCTGTTAAAGACAGAGTTATGGTGGTTGATACTGAGGCATACACCTATGATAATGAGGTCATTAAGAAAGCTAAAGCAATGGGAAAGCCCAAAAATCCTGAAGAAGAAGCTACTGTGAAAACTACTAGAGCCATAAAACATCATCAAAAAAGCTGA 1263 0.4363 MKSIISKNPNLSSLCTLRRTSSARVMLLSAIPLLAPLTVAHLSHGWSRRRPLSLRFHASLAAVSDLSLSQALSLSVTIASSSSCLGCQRFLCHELVRGGSIPWWQLLRGSIERSSANGSLLYLPLFLPVKVSKESSYSSDDSDKEEEKPSKTPQKSAKDVEMVDADSAKKVSKTPSTPSVAIGGSKTLFVGNLSFSLQRSDFEEFFKDCGEVVDVRFSVDDAGRFKRFRHVEFAIAEAAQNALELNEHELLNHLVRLDLARERGSYIPGGNFSNSFQKGDQHQTGQTIFIRGFDKSLGKEIRASLNEHFRSCREISRVSVPKDFESGGPQCKLTPGVIYSFAYIDFKDFSSMKKVLELNETELAGGYYLSVKDRVMVVDTEAYTYDNEVIKKAKAMGKPKNPEEEATVKTTRAIKHHQKS 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g03607 420 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 188 255 IPR000504 GO:0003723
Adu03g03607 420 SMART rrm1_1 287 372 IPR000504 GO:0003723
Adu03g03607 420 SMART rrm1_1 187 258 IPR000504 GO:0003723
Adu03g03607 420 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 134 378 - -
Adu03g03607 420 Gene3D - 129 266 IPR012677 -
Adu03g03607 420 PANTHER BNAA08G02930D PROTEIN 134 378 - -
Adu03g03607 420 MobiDBLite consensus disorder prediction 135 176 - -
Adu03g03607 420 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 186 262 IPR000504 GO:0003723
Adu03g03607 420 Gene3D - 272 372 IPR012677 -
Adu03g03607 420 MobiDBLite consensus disorder prediction 396 412 - -
Adu03g03607 420 MobiDBLite consensus disorder prediction 136 168 - -
Adu03g03607 420 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 286 372 IPR000504 GO:0003723
Adu03g03607 420 SUPERFAMILY RNA-binding domain, RBD 185 328 IPR035979 GO:0003676
Adu03g03607 420 MobiDBLite consensus disorder prediction 396 420 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g03607 Adu-Chr3 124110159 124124124 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g03607 178 347 Eukaryotic Initiation Factors Gene Family AT1G22760 23.164 5.25e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g03607 K11294 - ahf:112735478 432.565