Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g03559 ATGAGAAAACCTTGTTGCGACAAGGAAGGTACCAACAAAGGTGCTTGGTCCAAGCAAGAAGACCAAAAACTCATTGACTACATCCACCTTCATGGCGAAGGCTGTTGGCGTTCCCTTCCAAAAGCCGCCGGCCTTCATCGTTGCGGTAAAAGCTGCCGACTCAGATGGATCAATTATTTACGACCCGACATTAAACGCGGCAACTTTGCCCCAGACGAAGAAGATCTCATCATCAAACTCCATGCCCTCCTTGGCAACCGGTGGTCACTTATAGCGGGAAGGTTGCCAGGACGCACCGACAATGAAGTCAAGAACTACTGGAATTCTCACATCCGCAGGAAGCTCATCAACATGGGAATTGATCCAAACAACCACAAGTTATATCAAACATCTCCTCTTCTTCCTCACGCTGCTTCTTCTTCATCCCACCACCACCACCTCAATCTTGACCTAACCATTGCTTTCCCTGCTCATTATTCTTCTTCCCCTACATTTACCCTCGCGGAAGAAGACGACAACAATAACAACGATAATCCTAAACCAACTTCTGAGAACATGGATGAATCCAACCCTACCCTTCTTTTGTTTCAATAA 594 0.4663 MRKPCCDKEGTNKGAWSKQEDQKLIDYIHLHGEGCWRSLPKAAGLHRCGKSCRLRWINYLRPDIKRGNFAPDEEDLIIKLHALLGNRWSLIAGRLPGRTDNEVKNYWNSHIRRKLINMGIDPNNHKLYQTSPLLPHAASSSSHHHHLNLDLTIAFPAHYSSSPTFTLAEEDDNNNNDNPKPTSENMDESNPTLLLFQ 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g03559 197 MobiDBLite consensus disorder prediction 164 197 - -
Adu03g03559 197 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Adu03g03559 197 SMART sant 12 62 IPR001005 -
Adu03g03559 197 SMART sant 65 113 IPR001005 -
Adu03g03559 197 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Adu03g03559 197 PANTHER MYB TRANSCRIPTION FACTOR 2 133 - -
Adu03g03559 197 SUPERFAMILY Homeodomain-like 11 107 IPR009057 -
Adu03g03559 197 CDD SANT 68 111 IPR001005 -
Adu03g03559 197 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 133 - -
Adu03g03559 197 CDD SANT 15 60 IPR001005 -
Adu03g03559 197 Gene3D - 68 146 - -
Adu03g03559 197 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Adu03g03559 197 Pfam Myb-like DNA-binding domain 66 110 IPR001005 -
Adu03g03559 197 Gene3D - 13 65 - -
Adu03g03559 197 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Adu03g03559 197 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g03559 Adu-Chr3 123430894 123431775 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g03559 2 172 MYB Transcription Factor Family AT4G38620 58.947 2.25e-76 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Adu03g03559 Myb_DNA-binding 4.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g03559 K09422 - tcc:18601922 268.47