Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g03548 ATGTCTTCAGGGACATCATCGTATTGGTGCTACAGGTGCAGTCGATTTGTCAGGGTATGGAGGCACGACACTGTGGCTTGTCCCGACTGCGACGGCGGTTTCGTTGAGGAGATCGAGCCTCCGCCACGCTCCCTGTCTCAGATCGAGATCAACGGTATTGGGCGTTACGAGCACCCTCCGGCTTCAAAAGCCGCCATTGATTCCTTACCGACAATCGAAATCGATGAGAACCACTTGGATTTGGAATCTCACTGTGCAGTTTGTAAAGAGGCTTTCGAGATGGGAACTTCAGTGAGGGAGATGCCATGTAAGCATATATACCACCAAGACTGTATATTGCCGTGGCTCACACTCCACAATTCCTGCCCTGTTTGCCGCCACGAGTTGCCATCCGATAACCCCAGCAACAGCAGCGGTTCGCCGTCATCGTCGGGGCACTCGGTTGCGTTGACCGAGGATGAGAATGTTGGGTTGACCATTTGGAGGCTCCCCGGTGGAGGATTTGCTGTTGGGAGATTCTCTGGTGGGAGGAGAGGTGCTGAGAGGGAGCTTCCTGTCGTGTACACTGAGATGGATGGTGGCTTTAACAATGGTGGTGAGCCCAGGAGGATTTCTTGGTCTTCTAGAGGGACTCGAGGGCGGCAGAGTGGTGCCTTTCAGAGGTTTTTTACGAGTTTGTTTGGTTGCTTCAGTGGTAGGGGGAGCTCGTCGCGTTCTCGAACCGTGGATCACTCTCCACACTCGAGAAGGACATGGTCTATGGATGTAAACAGTGGAATGAGGTCATGGTGA 792 0.5328 MSSGTSSYWCYRCSRFVRVWRHDTVACPDCDGGFVEEIEPPPRSLSQIEINGIGRYEHPPASKAAIDSLPTIEIDENHLDLESHCAVCKEAFEMGTSVREMPCKHIYHQDCILPWLTLHNSCPVCRHELPSDNPSNSSGSPSSSGHSVALTEDENVGLTIWRLPGGGFAVGRFSGGRRGAERELPVVYTEMDGGFNNGGEPRRISWSSRGTRGRQSGAFQRFFTSLFGCFSGRGSSSRSRTVDHSPHSRRTWSMDVNSGMRSW 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g03548 263 SUPERFAMILY RING/U-box 65 132 - -
Adu03g03548 263 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 51 132 IPR013083 -
Adu03g03548 263 Pfam Ring finger domain 84 126 IPR001841 -
Adu03g03548 263 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 44 224 - -
Adu03g03548 263 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 2 45 - -
Adu03g03548 263 MobiDBLite consensus disorder prediction 130 149 - -
Adu03g03548 263 SMART ring_2 85 125 IPR001841 -
Adu03g03548 263 MobiDBLite consensus disorder prediction 232 263 - -
Adu03g03548 263 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1-LIKE PROTEIN 44 224 - -
Adu03g03548 263 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1-LIKE PROTEIN 2 45 - -
Adu03g03548 263 ProSiteProfiles Zinc finger RING-type profile. 85 126 IPR001841 -
Adu03g03548 263 Pfam Protein of unknown function (DUF1117) 156 249 IPR010543 -
Adu03g03548 263 CDD RING-H2_RNF126_like 85 126 - -
Adu03g03548 263 Pfam zinc-ribbon 6 38 IPR039525 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g03548 Adu-Chr3 123238197 123239057 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g03548 45 133 C3H Transcription Factor Family AT5G15820 44.444 3.28e-22 92.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g03548 - K11982 gmx:100807324 324.709