Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g03540 ATGAAAGGGTTTGGGTCTTCATGTGGAGCATGCAAGTACCTAAGGAGAAGGTGCACAAGAGATTGTGTATTTTCCCCTTACTTCTCCTATGATGAGGCATCAACCCATTTTGCGGCAGTTCATAAGGTGTTTGGTGCTAGCAACGTCTCTAGACTGTTGCTACACCTTCCGTTGCACAACAGAAGTGACGCTGCTATCACCATAACTTACCAAGCTCTCGCTCGCATGCACGATCCTATCTATGGTTGTGTTGCTTATATCTATGTATTGCAGCAACAGGTTGCAAGCTTGCAAAGGGAGATAGATGATATACTAGGAAATAATTTCATGATGAAGAATTCCTCATGTCTTGGTGTTGAGAATTATTGTGGTAGTGTTCATCAATCACCGATGATGAACATCAACAACGGAATAGAGTATATTGTGCAAGAAGGAACAAGGAGTCAAT 448 0.4219 MKGFGSSCGACKYLRRRCTRDCVFSPYFSYDEASTHFAAVHKVFGASNVSRLLLHLPLHNRSDAAITITYQALARMHDPIYGCVAYIYVLQQQVASLQREIDDILGNNFMMKNSSCLGVENYCGSVHQSPMMNINNGIEYIVQEGTRSQ 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g03540 149 ProSiteProfiles LOB domain profile. 6 108 IPR004883 -
Adu03g03540 149 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 116 - -
Adu03g03540 149 Pfam Lateral organ boundaries (LOB) domain 7 102 IPR004883 -
Adu03g03540 149 PANTHER LOB DOMAIN-CONTAINING PROTEIN 33 1 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g03540 Adu-Chr3 123058735 123059900 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g03540 1 135 AS2 family AT5G06080 60.870 5.90e-55 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Adu03g03540 LOB 8.7e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g03540 K13945 - gmx:100787638 194.126