Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g03519 ATGGCTTCTCCTTCTTCAGATATCAACCATCTTTCACACCCTTGCATATATGGGGATTTTGTTTCTTCATATTCAGAGCGAAAGTCTGGGTTTATGAAATGGTTTGGTAAGATTTTCAAAATTGGATCATCAAGTAGAGGAAGGAGTGATAGTAGCGGTCGTCATCTACAGCAGCCTGCAGAGGAAAACATGGTTTGGCGAGCACCTTCTAGATCATTGGATGACCGTGCTAGATCCCGGAAGGATGAAGAGGATTTGAACCGAGCAATTGCACTTTCTTTAGGTGAAAATTTCAAGAGACCAAATGGTTATAGATGGCACACAGGCAGTGATGATATTGATGATTACTCAAAGGCCCTTCATCCTCCATATACACCTGCACCTTTATATCCCAGAGGATATAGTTTGGCAAATGTAAGAATATGTGGAGGGTGCAATCAGGAGATACTATATGGAAATTGTTTGGGATGGATGGATACTTATTTTCATCCAGATTGCTTCCGTTGTCACTCTTGTCGCCACCCTATTACTGAACGTGAGTTTTCTTTGTCAGGGAGCCGTCCATATCACAAGACTTGTTTTAAAGAGTTAACACATCCTAAGTGTGAAGTTTGCCATCAATATATTCCAATAAATGCAGCTGGTTTGATTGAGTATAGGTGCCATCCTTATTGGTACCAAAAGTATTGTCCATCACATGAGTATGATAATACAGCTCGTTGTTGTAGTTGTGAAAGATTAGAGTCGCGCAACGAAAAGTATTATAGACTGGACGATGGACGGATTTTGTGCTTAGAGTGCATGGAATCTGCTATAACGGATACTGGTGAATGCCAGCCTCTATACCATGCCATCAGAGATTATTATGAAGGGATGAACATGAGAATAGATCAGCAAGTTCCTATGCTTCTTGTGGGTAGAGATGCACTTAATGAAGCCATTGTTGGGGAGAAGAATGGTTTCCATCATTTGCCTGAAACAAGGGGTTTGTGCCTCTCAGAAGAGCAAACTGTCACCAGTGTACATAGATGGCCAAGAATGGGAGGGCATAGATTCATAGGAATGAGAACTCAACATCAAAAGCTGACTAGAAAATGTGAAGTTACAGCTATTCTTGTTCTTTATGGTCTTCCAAGGTTACTCACAGGTGCTATCCTAGCCCATGAGTTGATGCATGCTTGGTTGAGACTTAAAGGTTACCGGAACCTTGATGCGGAAGTAGAGGAAGGTATTTGTCAGGTTCTATCATACATGTGGCTTGAATCAGAAGTGATGCCAGGGTCTAGTAGATACATGCCATCAACATCATCAGCATCTTCATCTTCTTCTTACTCCACATCATCATCATCATCAAAGAAAGGAGCAAGGTCTCAAGTTGAGAACAAGTTAGGAGAGTTTTTCATGAACCAGATAGCCAATGATTCGTCACCAGCATATGGAGGTGGGTTTAGGTCTGCAATTGAAGCAGTTAATAAGTATGGTTTGCGTTGTACCTTGGATCATATTCGTTTGACTGGTCACTTCCCACTGTAA 1533 0.4149 MASPSSDINHLSHPCIYGDFVSSYSERKSGFMKWFGKIFKIGSSSRGRSDSSGRHLQQPAEENMVWRAPSRSLDDRARSRKDEEDLNRAIALSLGENFKRPNGYRWHTGSDDIDDYSKALHPPYTPAPLYPRGYSLANVRICGGCNQEILYGNCLGWMDTYFHPDCFRCHSCRHPITEREFSLSGSRPYHKTCFKELTHPKCEVCHQYIPINAAGLIEYRCHPYWYQKYCPSHEYDNTARCCSCERLESRNEKYYRLDDGRILCLECMESAITDTGECQPLYHAIRDYYEGMNMRIDQQVPMLLVGRDALNEAIVGEKNGFHHLPETRGLCLSEEQTVTSVHRWPRMGGHRFIGMRTQHQKLTRKCEVTAILVLYGLPRLLTGAILAHELMHAWLRLKGYRNLDAEVEEGICQVLSYMWLESEVMPGSSRYMPSTSSASSSSSYSTSSSSSKKGARSQVENKLGEFFMNQIANDSSPAYGGGFRSAIEAVNKYGLRCTLDHIRLTGHFPL 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g03519 510 ProSitePatterns LIM zinc-binding domain signature. 142 176 IPR001781 -
Adu03g03519 510 Pfam Protein DA1 291 505 IPR022087 -
Adu03g03519 510 ProSiteProfiles LIM domain profile. 140 200 IPR001781 -
Adu03g03519 510 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 136 167 - -
Adu03g03519 510 CDD LIM_DA1 142 194 - -
Adu03g03519 510 PANTHER PROTEIN DA1-RELATED 2 21 510 IPR045218 -
Adu03g03519 510 MobiDBLite consensus disorder prediction 44 63 - -
Adu03g03519 510 MobiDBLite consensus disorder prediction 44 58 - -
Adu03g03519 510 Gene3D Cysteine Rich Protein 132 199 - -
Adu03g03519 510 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 168 225 - -
Adu03g03519 510 SMART lim_4 141 193 IPR001781 -
Adu03g03519 510 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 21 510 - -
Adu03g03519 510 Pfam LIM domain 142 195 IPR001781 -
Adu03g03519 510 MobiDBLite consensus disorder prediction 430 455 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g03519 Adu-Chr3 122742668 122745794 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Adu03g03519 DA1-like 1.2e-98 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g03519 - - gmx:100798829 871.692