Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g03423 ATGTGTGTGTGTCTTCTGATTCAAGCATTGGCTGCTACTACTACTACTGATAGCCGTCAAGATGTTGAATATTGTTTGTGGAAGCTTCACTGTAAGGAATTTCGCAGAAGAATAAAGAAATCCTCTCATAATACAGAGAATGATAAAAACAATGCTGAAATGTCGACAGTTTTGTCATCGTTTCTTGGTTTGTATGGAGAATCTGGCCAGGAAGGAAGAAGAAAGAATGAAGGAGGAAGACCAATAATGGAAATGAAATCGTTTCAGATTTCATTCATAGCTTGTCGTGAGCCGCATGTTCTAAGCTCAAAATCGGAAGGCACGCAGAGAGCTCGCAACGGCGGCATCACAATGAAGTTCAACATTGCTAATCCCACTACTGGATGCCAGAAGAAGCTCGAGATCGACGATGACCAGAAGCTACGTGCATTTTGGGACAAGAGGATCTCACAGGAGGTCCTTGGTGATGCTCTTGGAGAGGAATTCAAAGGCTATGTCTTCAAAATCACTGGTGGCTGTGACAAGCAAGGATTCCCAATGAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGTCTTTTGCTTCACAGAGGAACTCCTTGCTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGGAGAAAGTCTGTTCGCGGGTGCATTGTCAGCCCTGATCTCTCAGTTTTGAACTTGGTGATTGTGAAGAAGGGTGACAATGATCTTCCCGGCCTGACTGATGTTGAGAAGCCAAGGATGAGGGGGCCAAAGAGAGCATCCAAAATCCGCAAGCTGTTCAACCTCTCAAAGGAGGATGATGTGAGGAAGTATGTTAACACCTACCGCAGAACCTTTACAACCAAAAATGGCAAAAAGGTGAGCAAGGCTCCTAAGATACAAAGACTGGTGACACCTTTGACACTCCAAAGGAAGCGAGCAAGGATTGCTGACAAGAAGAAGAGAATTGCCAAGGCCAAGTCAGAAGCAGCAGAGTATCAGAAGTTGCTTGCATCGAGGTTGAAGGAACAGAGGGAGCGCCGTAGTGAGAGCTTGGCCAAGAGGAGATCCAAGCTTTCCAGTGCGGCTGCCAAGGCAACT 1092 0.4652 MCVCLLIQALAATTTTDSRQDVEYCLWKLHCKEFRRRIKKSSHNTENDKNNAEMSTVLSSFLGLYGESGQEGRRKNEGGRPIMEMKSFQISFIACREPHVLSSKSEGTQRARNGGITMKFNIANPTTGCQKKLEIDDDQKLRAFWDKRISQEVLGDALGEEFKGYVFKITGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGDNDLPGLTDVEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKNGKKVSKAPKIQRLVTPLTLQRKRARIADKKKRIAKAKSEAAEYQKLLASRLKEQRERRSESLAKRRSKLSSAAAKAT 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g03423 364 SMART Ribosomal_S6e_2 118 245 IPR001377 GO:0003735|GO:0005840|GO:0006412
Adu03g03423 364 Coils Coil 306 333 - -
Adu03g03423 364 PANTHER 40S RIBOSOMAL PROTEIN S6 118 360 IPR001377 GO:0003735|GO:0005840|GO:0006412
Adu03g03423 364 Pfam Ribosomal protein S6e 118 245 IPR001377 GO:0003735|GO:0005840|GO:0006412
Adu03g03423 364 MobiDBLite consensus disorder prediction 336 364 - -
Adu03g03423 364 Hamap 30S ribosomal protein S6e [rps6e]. 9 234 IPR020924 GO:0003735|GO:0005840|GO:0006412
Adu03g03423 364 ProSitePatterns Ribosomal protein S6e signature. 169 180 IPR018282 GO:0003735|GO:0005840|GO:0006412
Adu03g03423 364 Gene3D - 250 351 - -
Adu03g03423 364 MobiDBLite consensus disorder prediction 336 352 - -
Adu03g03423 364 PANTHER 40S RIBOSOMAL PROTEIN S6 118 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g03423 Adu-Chr3 121456634 121460913 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g03423 118 362 Cytoplasmic Ribosomal Protein Gene Family AT5G10360 73.061 7.55e-119 340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g03423 K02991 - gmx:100801194 403.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu03g03423 03 121456634 121460913 Adu10g00257 10 3133819 3136069 PCT