Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g03408 ATGCAGATTGATGAAATCAAGACACAGCAAGTAGTAGGAGAAGACGACGATGGCCCGCCACCGGGTTGGCAACCCATCCATACGCCACCGCCACAACCGCCTCCACAGTCACAGTCACGGTCACGGTCACCACCTCGATGTCCATCCAATTTGGGTCAAATAGTTTGTGGGTCTTGCCATCGCCTGCTTGCATATCAGCGAGGTGCCAAACATGTCCAATGTGTGAGCTGTCAGACAGTTACTATTATATTGTTGGTTGGACAAGTTAAGTGTGGGGGCTGTGCAGTATTGCTAATGTACCCATATGGTGCTCCACAAGTTAGGTGTTCCTCATGTCGATTTGTGACAGAAATTGGGGCACACAACAAGCGACCTCCATGGTCTGAACAACAAAGGAAACCAACCCTACCTAAAACTGCTTTTATACTACTCAGGCTGAAAGGCCTACAGAAAACAGATGGCTTATACAAGAGCTATACGGTTTAA 486 0.4794 MQIDEIKTQQVVGEDDDGPPPGWQPIHTPPPQPPPQSQSRSRSPPRCPSNLGQIVCGSCHRLLAYQRGAKHVQCVSCQTVTIILLVGQVKCGGCAVLLMYPYGAPQVRCSSCRFVTEIGAHNKRPPWSEQQRKPTLPKTAFILLRLKGLQKTDGLYKSYTV 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g03408 161 PANTHER PROTEIN LSD1 7 136 IPR040319 -
Adu03g03408 161 MobiDBLite consensus disorder prediction 1 46 - -
Adu03g03408 161 Pfam LSD1 zinc finger 91 115 IPR005735 -
Adu03g03408 161 Pfam LSD1 zinc finger 56 80 IPR005735 -
Adu03g03408 161 MobiDBLite consensus disorder prediction 22 41 - -
Adu03g03408 161 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 53 83 IPR005735 -
Adu03g03408 161 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 88 116 IPR005735 -
Adu03g03408 161 PANTHER PROTEIN LOL2 7 136 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Adu03g03408 zf-LSD1 2.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g03408 - - gmx:100780865 160.229