Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g03225 ATGCATCACAGGAAGCTTTTTTCAAGGCAGGATGCCTGCAGTGACCAGTGTTACAATGAAGACCCTTCTTGTTTGGGAAGATCGGATTGCAACGACTGCATCAAATGCTCGTCCACCCTGAATCCTCCACCACCACACAGCAACCGTCACATCCCCACCTTCTTGATCATCATAGTTCCCGTCGTATGCGCCGCCCTCTTTGCCCTCTTCTGCTACGTCATCTACGCCAAGTTCTACTCCCCCAGGAGCAGGTCAAGGACCACGTTCTTCTCGTTATCGTTTCCGTTACGGCTACAACAAGGACAGGAACGGAACGGCGACGACTTTCTGGATGACGGAGAAGGCGCCACTACGGTGGACCACCCTATCTGGTACATCCGTACAGCGGGTCTGAACAAAACCATCATCGAGGCCATCACGGTTCTGAAGTACAAGAAAGGCGAAGGGTTGGTTGAAGGAACAGAGTGCTCTGTTTGCTTGAGCGACTTTGAAGAAGACGACACCCTCAGGCTGTTACCCAAATGCAACCACGCTTTCCATCTCCCTTGTATTGACACGTGGCTCGCATCTCACACCAACTGTCCCATGTGTAGGGCTCCCATTGTTACCAACCCCAGAGCTTCTAGGCTTCCCTCCATGGACCACCCTGCTACTCTTGTTGTTGATTCCACTCCTCTTCAGATTCGTGGAGACGCTGCAACAACGGAAGAAAACAGTGGCAGTGAGATTGTGGAGAGGAATGGATCAGAGGAACAAGTTGAAGCTGATGTTGAAGCTGCAACAAGGAACGTGCAGCCAAGGAGATCAGTGTCTTTGGATTCTTCTTCTGCTGCCAAGATCAGCGCTGCTCTTGTTGCTGCTACTACTACTGTTGCATCAGTGCAAGAATCTAAAGAGAATTCAAAGAGGATTACTGCTTCTGCAAAAGGTAGTAGTTCATCATCTTCTTCTTCTTCGAGTGCGCCTAGTTCAATGAAGAGGTCACGCTCCTTCAGTGGGAAACACGTGCTATCCTGGTACGGCCGCAACCACAACCAGAACCAGAAGAAGACGAATCCTCCAGTCAGAAGCTTTTGA 1077 0.5032 MHHRKLFSRQDACSDQCYNEDPSCLGRSDCNDCIKCSSTLNPPPPHSNRHIPTFLIIIVPVVCAALFALFCYVIYAKFYSPRSRSRTTFFSLSFPLRLQQGQERNGDDFLDDGEGATTVDHPIWYIRTAGLNKTIIEAITVLKYKKGEGLVEGTECSVCLSDFEEDDTLRLLPKCNHAFHLPCIDTWLASHTNCPMCRAPIVTNPRASRLPSMDHPATLVVDSTPLQIRGDAATTEENSGSEIVERNGSEEQVEADVEAATRNVQPRRSVSLDSSSAAKISAALVAATTTVASVQESKENSKRITASAKGSSSSSSSSSSAPSSMKRSRSFSGKHVLSWYGRNHNQNQKKTNPPVRSF 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g03225 358 SMART ring_2 156 197 IPR001841 -
Adu03g03225 358 MobiDBLite consensus disorder prediction 339 358 - -
Adu03g03225 358 CDD RING-H2_PA-TM-RING 155 198 - -
Adu03g03225 358 MobiDBLite consensus disorder prediction 243 257 - -
Adu03g03225 358 PANTHER RING-H2 FINGER PROTEIN ATL54 10 341 - -
Adu03g03225 358 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 10 341 IPR044675 -
Adu03g03225 358 ProSiteProfiles Zinc finger RING-type profile. 156 198 IPR001841 -
Adu03g03225 358 Pfam Ring finger domain 155 198 IPR001841 -
Adu03g03225 358 SUPERFAMILY RING/U-box 150 204 - -
Adu03g03225 358 MobiDBLite consensus disorder prediction 294 331 - -
Adu03g03225 358 MobiDBLite consensus disorder prediction 232 275 - -
Adu03g03225 358 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 130 206 IPR013083 -
Adu03g03225 358 MobiDBLite consensus disorder prediction 294 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g03225 Adu-Chr3 118652533 118653609 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g03225 102 334 C3H Transcription Factor Family AT4G33565 41.949 1.29e-46 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g03225 - - aip:107631077 659.833