Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g03177 ATGACAGGAATATCAGAAGTGTTGTATCAGCTGTACGCTAAAGCAATAGTGCTATTAGCATACATGCTCATAGAACTTGTCCTTCTTATTCAGTATCTCAAATCAGACAAACGCAGCAGCACCACAATCACCACCACCCAGTATCTCAGATTCGTTGAAGAGAAGAACCCCACAATTCTCTACACCAAGAGCATGATGCAGCAACTGGATCCTGTTGAATGCAGAGTGTGCTTGAATGAGTTCCATGAAGGTGATCAATTGAGGAACCTCAAGTGTCACCACGCTTTTCATAGGGATTGTTTGGACAAGTGGTTGCAACAATCTTTTGCTACTTGCCCTCTTTGCAGGATCAAGCTGTTACCTGATTATGTTGTTGCAAAGTATCAGAATAATCACCATAATCATTATCAGCGCAATAATACTGAGGTGAAGAAGTTAAAGGACTTGTTGTGCACGAAAAAGAGCCACCTGGGCCCTGGCATGTTAATGCTGGAAAATACCGCCACCGTCAGTAGTGGTGGCTTGGCCACAATCGAAGAAGCACGACAGAACCAACCTCTGCAAGGATCGCCGTCAAGCTCCAATCCCTCTGAAAATCAATGCTGGCAGACACCCGAATTGCCGCCGCCTGCTAAATCCAACTCCGTGTTTGCAATGATGGTGGACACCTCAACACTTGGGCGCTTCCACCACCAAAGACTCGAATTCAAGCACTGTCTCCCCGCAATCATAACTTCCCACAGAACCTTCTTCACCGTCCTCTGGATCGCCGCCTTCGCCTCCGTCTTCATCTGGCAGAGGAACATTGTCGTCAGAGGCTTTTTCCTCTTCAGTTGGACCCTCCCGCTGCACCCGATTCCTAAGCTGAGGCCGGTGGCTTTCAACTTGACAGATTTCAGGGGTGTTGGCGATGGTGTCACCCTCAACATTGGGGCATTTGAGAGGGCCGTTTTTGCGATTTTCAAGTTGTGGAATAAAGGTGGTGGCCAGCTCAATGTGCCTCCCGGTCGCTGGCTTACTGCGCCCTTCAATCTCACCAGCCATATGACGCTTTTTGTAGTTCAAGATGCTGTTATTCTTGGACTTGATGTGAGTTGTTGA 1101 0.4796 MTGISEVLYQLYAKAIVLLAYMLIELVLLIQYLKSDKRSSTTITTTQYLRFVEEKNPTILYTKSMMQQLDPVECRVCLNEFHEGDQLRNLKCHHAFHRDCLDKWLQQSFATCPLCRIKLLPDYVVAKYQNNHHNHYQRNNTEVKKLKDLLCTKKSHLGPGMLMLENTATVSSGGLATIEEARQNQPLQGSPSSSNPSENQCWQTPELPPPAKSNSVFAMMVDTSTLGRFHHQRLEFKHCLPAIITSHRTFFTVLWIAAFASVFIWQRNIVVRGFFLFSWTLPLHPIPKLRPVAFNLTDFRGVGDGVTLNIGAFERAVFAIFKLWNKGGGQLNVPPGRWLTAPFNLTSHMTLFVVQDAVILGLDVSC 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g03177 366 SUPERFAMILY RING/U-box 64 124 - -
Adu03g03177 366 PANTHER - 1 142 - -
Adu03g03177 366 MobiDBLite consensus disorder prediction 183 210 - -
Adu03g03177 366 PANTHER E3 UBIQUITIN-PROTEIN LIGASE XERICO-RELATED 1 142 - -
Adu03g03177 366 Pfam Ring finger domain 73 116 IPR001841 -
Adu03g03177 366 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 34 121 IPR013083 -
Adu03g03177 366 SUPERFAMILY Pectin lyase-like 278 361 IPR011050 -
Adu03g03177 366 SMART ring_2 74 115 IPR001841 -
Adu03g03177 366 Gene3D - 290 365 IPR012334 -
Adu03g03177 366 ProSiteProfiles Zinc finger RING-type profile. 74 116 IPR001841 -
Adu03g03177 366 CDD mRING-H2-C3H2C2D_ZSWM2 73 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g03177 Adu-Chr3 117285406 117291018 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g03177 228 363 Glycoside Hydrolase AT1G19170 57.143 4.54e-44 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g03177 - - lja:Lj5g3v1749290.1 222.631
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu03g03177 03 117285406 117291018 Adu03g03177 03 117285406 117291018 ECH
Adu03g03177 03 117285406 117291018 Adu10g00947 10 15756527 15756862 PCT