Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g03109 ATGCAACCAATGATTATGTTTCCCGGTCTGAATAAAGAGGAGGAGATGTATACTATGGTTGAGGCTTTGACTCATGTTGTTCGTGGAGAAATACCTCAAGAAGCTGCTGATGTTGCTGTGACATCTAACATGGCTTCTGTGTCTGCAACACCATCTACGTCCTCTTCATCTTATGGACTCAATTCTAATCTCAAAAGAAGTAGGGAAGATGATATACCCTTTCTTGCTTCATCCTCTGCTGCTATTCCACCAATTTCAGAGCTTGCAATCAACGGGAAAACAAGAAGCGAAAGAAGCGAAATGGGAGATGATGCAATAGTGTACGAATACAGAACAGATCTAAAGAAGAATGATGAGGAGAAGAGGAAGAACAATGAAGGGAAGAGAAAATACAGAGGAGTGAGGCAGAGGCCATGGGGGAAGTGGGCTGCAGAGATCCGAGATCCATTCAAAGCAGCAAGAGTGTGGTTAGGAACCTTCAACACTGCAGAGGCTGCTGCCATTGCTTACGACCAAGCCTCTCTCCGCTTCAGAGGCAACAAAGCCAAACTCAACTTCCCTGAAAATGTTAGGGTGAAGCAACCACCACCACCAACAGCTTTCACCATTTCTCATACTGCTTCTTCTTCTTCTTCTGGTGCATATGTGCCCCTTCCACCTTCCACTGTGGAGGCTTCACCACCCAAGTTTTATGACTTCTCCTCAGAGTTTTCAGACTTCCCCATCAGTTTATATGATCAGATGTTTGTGTCGTCTGCAATGGTTTCTCATATTCAAGCTTCTTCGGCTTCATCGCCAGCGGCATCGAATTCTTCCTCTTCTTCAGTGTTTGCTTATTCTGTAACTTCTGCTCCACAGGCAACTCCAATTCCTTCTGTTTATTCTGCTAAGCTGCCGCCATGGTCTTCTTCTGGTAATAGCTCCTCTCCTTCTAGATGA 939 0.4505 MQPMIMFPGLNKEEEMYTMVEALTHVVRGEIPQEAADVAVTSNMASVSATPSTSSSSYGLNSNLKRSREDDIPFLASSSAAIPPISELAINGKTRSERSEMGDDAIVYEYRTDLKKNDEEKRKNNEGKRKYRGVRQRPWGKWAAEIRDPFKAARVWLGTFNTAEAAAIAYDQASLRFRGNKAKLNFPENVRVKQPPPPTAFTISHTASSSSSGAYVPLPPSTVEASPPKFYDFSSEFSDFPISLYDQMFVSSAMVSHIQASSASSPAASNSSSSSVFAYSVTSAPQATPIPSVYSAKLPPWSSSGNSSSPSR 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g03109 312 Pfam AP2 domain 130 179 IPR001471 GO:0003700|GO:0006355
Adu03g03109 312 CDD AP2 130 189 IPR001471 GO:0003700|GO:0006355
Adu03g03109 312 PRINTS Ethylene responsive element binding protein signature 131 142 IPR001471 GO:0003700|GO:0006355
Adu03g03109 312 PRINTS Ethylene responsive element binding protein signature 153 169 IPR001471 GO:0003700|GO:0006355
Adu03g03109 312 MobiDBLite consensus disorder prediction 297 312 - -
Adu03g03109 312 PANTHER DNA-BINDING DOMAIN PROTEIN 37 306 - -
Adu03g03109 312 PANTHER DNA-BINDING DOMAIN 37 306 IPR044808 GO:0003700|GO:0009873
Adu03g03109 312 Gene3D AP2/ERF domain 129 189 IPR036955 GO:0003700|GO:0006355
Adu03g03109 312 SUPERFAMILY DNA-binding domain 130 188 IPR016177 GO:0003677
Adu03g03109 312 SMART rav1_2 130 193 IPR001471 GO:0003700|GO:0006355
Adu03g03109 312 MobiDBLite consensus disorder prediction 289 312 - -
Adu03g03109 312 ProSiteProfiles AP2/ERF domain profile. 130 187 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g03109 Adu-Chr3 115669357 115671611 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g03109 121 192 AP2-EREBP Transcription Factor Family AT2G33710 75.000 2.48e-35 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Adu03g03109 AP2 3.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g03109 - - adu:107480341 497.278
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu03g03109 03 115669357 115671611 Adu03g03109 03 115669357 115671611 ECH
Adu03g03109 03 115669357 115671611 Adu10g01703 10 78410545 78413007 ECH