Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g03095 ATGGCGGAAGATAATTTAGAATGGCTGCGGAGAAGTCTTGTAGAGGGTATGACGAAGCCTATTAATTTTGATTCTTTGAAGCAAGTAGTTGCGAAGAACCTACCTAATGTCGTACAGATTCAGAAAATGGGAGCATACAAAGCTCTCCTGATTTTTGATAGTACTATGCATACTAAAGAAACATACACCTTATACATGAATAGCCTTTTACAATTGTTTCACAGTGTATGGAGGTGGGAGGAGTCGGAGCAGAGTGAAACTCGCAGAGTGTGGCTCGAATGCTTTGGGGTTCCGCTGCATGCATGGTCTGTCGACACTTTCAAAATGATAGGAGGCCAGTGGGGTGAAGTAGTTGGGTGTGATAGAGAGACGGAATTATGTAGTTCTTTTACTGTAGGTCGGGTGCAGATTGATACGTGTGTAATGGACGTAATTCAAAAATGGATCCACATCACTGTTGGTACTGGAGGCTTTGATGTATTGGTGAAGGAACTTGGACATGAGGCGTGTAACATGCAGTGCAAAGAAAGACCTGGTGATGATGGGATAAAAAATGTTGAGCAATGGAGCCACGGTAAACCACGTCTGGGTCTAGGAACGGACATAGGGCAGAGATGCCAAACAGAATCTTTGCATGAGGGTGGTCAGGACGAAGAGCTGTTGATGTTGGTGACAAGGGAAGAGGTAAAAGACGAGGGTAAGGTGGTTATTTTTGATAAAATTTTGAATGAATGGATTAATGGCAACAATTATCACAACGGCATGAAAATCGCAACAAATCAGGTAGTTAATGGCGATAATATTGGGATGACTGATTATGGGGGAGGGACCGTTATGAATTATAAGGCAGAGTCTGAGAGAACAGTTACTTGTGTTCTTAATGGGCTGAAAAGGCAGTCCACCAAGGAAACACCAAAAACCCAAAGATCTCATGGCCTAAATGAGATGTGGGCTAGCCAAAACAAAAAGAATGTGGAGCGAACTAAGGGCGTGCTGGGCCCAACCTCCTCTAAAGAAAGCAATGCAGAATACGGGCTTGGGTTGGGGAATTCGGGTAGGGCAAGGCATGTGTCCCACAATGCTATAGGTGAAAGGGTTGGAAGCAACTATCAGAGTGTGGTATTCGAGGGTGCCGTCGGCATTCACGCAGGGGCTAGCACCAGACGAAAGCAACGGCCGGTAGAATTGGGGAGCAGGTTGCGTCGCGATGGGGATGACCGCGTCGAAAAAGATGAGACCGGGCTGGATGTGACTGAGGCTGGCGATCGTGGATGCGAGGCTGGTAGTGGGCCGGACCGCATCAGAACTAACGGGATTGGGTCGAGTGAGACGGCGGGTGACGATCCTGGATGTGAGGGGAGTGGAGCCAGCGAGGCTGAGGAAACCAATGAGATTGTTGAGGTGGCTTCGGTGGGTGGGTGTGCTCAAGGGAGATGCGCAATTACAGGGACTTGTGACGCAACTGGGGACCGGCTTGCATTAGGATTAATTGGAGGACTGGTTCTTGGTGAAAGTGGAGGGAGAAGGGCTCTCAGAAAGGATGATGGTGGTGCTCGAGGGGATAATCTTGGGCATGATAATGGTGTGAATGCTGCAGATGGTATTGGAGGAAATGATATTGGGCATGAGGAACTTGGGCATGAGGAAGGTGTGAATGCTGCGGACAACAGTGATACTCAATGCTCAAAATTGGAAGAGCAGatgatagagaacaggaggacATTAGATTGTTGTTTCCGTGTGGGATCCCAATCCCTCCATCGATTTGGTTGGTGCCACGCTTCCGATATGGATTTGGATGATTTCCGATCCATACTGGACACCGCCGGCGTCGACGTTTGGGCTTTCTTTGACGCTGCAATCGACGTCGCTTCCACCGATAACGCCGACGAATTGAAGCGCCGCCGGGACGGAATCGTGGAGCGCCTTTACGCCGCCACTGCCACGCCTCCCCGGTGTCTGAATTGCGAAGCAAATGCCGTCGAAGCACACAATCAGCAAAACAAATCGTCAGAGGACGAGGATTTGGATCCTTTTGGAGGCTTATTCGATGACGAGCAGAAGAAGATTCTAGAAATTAAGCACCAACTTGAAGATCCTCACCAGTCGGAAGATTCGTTGGCGGAGTTGCTACAGAATCTGGCGGACATGGATATTACATTCCAGGCTTTAGAGGAAACTGACATTGGGAGGAACGTGAATCGGTTAAGGAAGCATTCCTCCAGTGAAGTTCGCAGATTGGTGAAGCTTCTTGTCAGGAAGTGGAAGGAAATTGTAGATGAATGGGTGAAGCTGAAGGCACCTGGAGAACCTGCTACTGCTAGCACTGTCATTGGTGATGATGAAGATTCGCCTCAGCAGAGGAATCAACTAAATGGGCATCATCAGATTCCTGATTTTGCATGCTCGCCAAATCCAGAGAATGGCAATTTTGAGTCTTCCGAACCAAAACCAATTCCTCGCAAAGAAGCTCTGCCAAAACCAGCTCAAAAATCACCATCGCCATTACCATCGGTTCCCACTCCTCCTCCTCCTCAAAACAGACAAAAAGAGAGCAATTTTGACGCGGAGAGACTTGCTTCAGCAAGAAAACGACTTCAAGAGAACTACAAAGAGGCTGCAAATGCGAAAAAGCAAAGAACGATACAGGTGATGGACCTGCATGAGTTGCCAAAACCAAAAGCCAAGAATGTTTTCTTTGGAAAGAACAAAGGCGGCATGGGTTCTCAGGGAAGGAAATGGTGA 2745 0.4769 MAEDNLEWLRRSLVEGMTKPINFDSLKQVVAKNLPNVVQIQKMGAYKALLIFDSTMHTKETYTLYMNSLLQLFHSVWRWEESEQSETRRVWLECFGVPLHAWSVDTFKMIGGQWGEVVGCDRETELCSSFTVGRVQIDTCVMDVIQKWIHITVGTGGFDVLVKELGHEACNMQCKERPGDDGIKNVEQWSHGKPRLGLGTDIGQRCQTESLHEGGQDEELLMLVTREEVKDEGKVVIFDKILNEWINGNNYHNGMKIATNQVVNGDNIGMTDYGGGTVMNYKAESERTVTCVLNGLKRQSTKETPKTQRSHGLNEMWASQNKKNVERTKGVLGPTSSKESNAEYGLGLGNSGRARHVSHNAIGERVGSNYQSVVFEGAVGIHAGASTRRKQRPVELGSRLRRDGDDRVEKDETGLDVTEAGDRGCEAGSGPDRIRTNGIGSSETAGDDPGCEGSGASEAEETNEIVEVASVGGCAQGRCAITGTCDATGDRLALGLIGGLVLGESGGRRALRKDDGGARGDNLGHDNGVNAADGIGGNDIGHEELGHEEGVNAADNSDTQCSKLEEQMIENRRTLDCCFRVGSQSLHRFGWCHASDMDLDDFRSILDTAGVDVWAFFDAAIDVASTDNADELKRRRDGIVERLYAATATPPRCLNCEANAVEAHNQQNKSSEDEDLDPFGGLFDDEQKKILEIKHQLEDPHQSEDSLAELLQNLADMDITFQALEETDIGRNVNRLRKHSSSEVRRLVKLLVRKWKEIVDEWVKLKAPGEPATASTVIGDDEDSPQQRNQLNGHHQIPDFACSPNPENGNFESSEPKPIPRKEALPKPAQKSPSPLPSVPTPPPPQNRQKESNFDAERLASARKRLQENYKEAANAKKQRTIQVMDLHELPKPKAKNVFFGKNKGGMGSQGRKW 914
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g03095 914 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 597 914 IPR044790 -
Adu03g03095 914 MobiDBLite consensus disorder prediction 830 847 - -
Adu03g03095 914 MobiDBLite consensus disorder prediction 386 461 - -
Adu03g03095 914 MobiDBLite consensus disorder prediction 512 544 - -
Adu03g03095 914 CDD TFIIS_I 687 760 - -
Adu03g03095 914 ProSiteProfiles TFIIS N-terminal domain profile. 685 762 IPR017923 -
Adu03g03095 914 MobiDBLite consensus disorder prediction 770 859 - -
Adu03g03095 914 MobiDBLite consensus disorder prediction 388 419 - -
Adu03g03095 914 MobiDBLite consensus disorder prediction 895 914 - -
Adu03g03095 914 Coils Coil 707 727 - -
Adu03g03095 914 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 597 914 - -
Adu03g03095 914 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 688 768 IPR035441 -
Adu03g03095 914 Pfam TFIIS helical bundle-like domain 710 759 IPR017923 -
Adu03g03095 914 Coils Coil 856 883 - -
Adu03g03095 914 Pfam Domain of unknown function (DUF4283) 7 137 IPR025558 -
Adu03g03095 914 MobiDBLite consensus disorder prediction 779 796 - -
Adu03g03095 914 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 684 771 IPR035441 -
Adu03g03095 914 SMART TFS2_5 690 761 IPR003617 GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g03095 Adu-Chr3 115387457 115397064 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Adu03g03095 DUF4283 3.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g03095 - - aip:107630962 606.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu03g03095 03 115387457 115397064 Adu03g03095 03 115387457 115397064 ECH
Adu10g01727 10 79540444 79544388 Adu03g03095 03 115387457 115397064 ECH
Adu03g03095 03 115387457 115397064 Adu10g01727 10 79540444 79544388 PCT