Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g03078 ATGACAGTCACACTGACTCTGTACTTGGTCTTGCCTGAAACAAAGCGCTCAGTCATTCTTAAAACATTCAGGAATGTACTTGCTAGTGCCAGTGCTGACAAGCAAGTCAAGATTTGGGATATGGCTACTGGAAAGTTCAAGCAGTTGCTTGGCATCATCGTGAACGAAAAATTCTTCTTAGTGAGGGATGGAAGGATGTCATCCCATCCTGGTTATAAGTGGTCAGTCACAGCTGATGTCGAGAGCTTGGCCTGGGATCCACACACTAACCACTATTTTGTGGTGAGTCTCGAGGATGGTACTGTCAAGTGTTTTGATGTTCGTACCGTAATGTCTAAATCCACATCTGATCTAAGTTCTACATTTACTCTTCATGCACATGACAAAGCTGTTACCTCAGTATCCTATAATGTGTCAGCACCTAATCTACTTGCTACTGGATCGATGGACAAAACGGTAATGCTTTGGGATTTATCGAACAACCAACCATCTGTTGTGGCATCTAAAAACTCCAATGCTGTAACTGTATTTTCTATTTCGTTCTCAGAGGACAATCCCTTTATGTTGGCTATAGGAGGCTCAGAGGGAAAATTGCAAGTTTGGGACACTTTATCTGAGTCTGCTGTCTCTCGGCGTTATGAAAATTACAACAAGAATAGAACTCGGTCGTGA 672 0.4256 MTVTLTLYLVLPETKRSVILKTFRNVLASASADKQVKIWDMATGKFKQLLGIIVNEKFFLVRDGRMSSHPGYKWSVTADVESLAWDPHTNHYFVVSLEDGTVKCFDVRTVMSKSTSDLSSTFTLHAHDKAVTSVSYNVSAPNLLATGSMDKTVMLWDLSNNQPSVVASKNSNAVTVFSISFSEDNPFMLAIGGSEGKLQVWDTLSESAVSRRYENYNKNRTRS 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g03078 223 ProSiteProfiles Trp-Asp (WD) repeats profile. 124 166 IPR001680 GO:0005515
Adu03g03078 223 ProSitePatterns Trp-Asp (WD) repeats signature. 27 41 IPR019775 -
Adu03g03078 223 ProSitePatterns Trp-Asp (WD) repeats signature. 144 158 IPR019775 -
Adu03g03078 223 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 124 162 - -
Adu03g03078 223 PANTHER PERIODIC TRYPTOPHAN PROTEIN 1 59 215 IPR044285 GO:0006364
Adu03g03078 223 SMART WD40_4 162 202 IPR001680 GO:0005515
Adu03g03078 223 SMART WD40_4 117 157 IPR001680 GO:0005515
Adu03g03078 223 SMART WD40_4 4 40 IPR001680 GO:0005515
Adu03g03078 223 SMART WD40_4 67 106 IPR001680 GO:0005515
Adu03g03078 223 SUPERFAMILY WD40 repeat-like 25 208 IPR036322 GO:0005515
Adu03g03078 223 Gene3D - 16 117 IPR015943 GO:0005515
Adu03g03078 223 Gene3D - 118 223 IPR015943 GO:0005515
Adu03g03078 223 ProSiteProfiles Trp-Asp (WD) repeats profile. 25 49 IPR001680 GO:0005515
Adu03g03078 223 Pfam WD domain, G-beta repeat 121 157 IPR001680 GO:0005515
Adu03g03078 223 Pfam WD domain, G-beta repeat 26 40 IPR001680 GO:0005515
Adu03g03078 223 PANTHER PERIODIC TRYPTOPHAN PROTEIN 1 21 47 IPR044285 GO:0006364
Adu03g03078 223 ProSiteProfiles Trp-Asp (WD) repeats profile. 169 211 IPR001680 GO:0005515
Adu03g03078 223 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 21 47 - -
Adu03g03078 223 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 59 215 - -
Adu03g03078 223 PRINTS G protein beta WD-40 repeat signature 189 203 IPR020472 -
Adu03g03078 223 PRINTS G protein beta WD-40 repeat signature 27 41 IPR020472 -
Adu03g03078 223 PRINTS G protein beta WD-40 repeat signature 144 158 IPR020472 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g03078 Adu-Chr3 115180111 115181936 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g03078 25 202 U-box Gene Family AT2G33340 29.670 3.42e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g03078 K14791 - gmx:100807947 294.664