LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Adu03g03075	ATGGATGATGCCGGTGGCGCCGTCGATGAAGTTGCGCGAGCACTCGATGTTGCTGATGCTCTCGGGAAGGCCGATAAATTGGACGATATTGCCCTCGGTTTGAAGGAGCTTGACATGGAACATTACGATGATGAAGATAAAGGAGTTGAGGTATTTAGTTCCGGGATTGGTGATCTTTATTATCCAAGTAACGACCTGGATCCTTATATCAAAGATAAGAACGATGATGATGACTCCGAGGAACTCGAAGACATGATCATTAATCCAACTGATTCTGTCATTGTTTGTGCTCGTACTGAGGACGATCTCAGTCTTCTCGAGGTTCATATACTTGAGGACGTCGGTACTAGTGAGATGAACATGTATGTCCATCATGATATCATAATTCCTGCATTTCCACTATCCACAGCTTGGCTTGACTGCCTTCAAGGAAGAGAGAAAGGAAACTTCTTAGCTGTTGGTTCAATGGAACCGTCAATAGAAATTTGGGACCTTGATGTTATTGATGCAGTGCAGCCATGCATGGTTTTAGGTGGCATTTCAGAAAAAAAGAAGAAGGGAAAGAAGAAATCAATCAAATACAAAGATGACAGTCACACTGACTCTGTACTTGGTCTTGCCTGGAACAAAGCGTTCAGGAATATACTTGCTAGTGCCAGTGCTGACAAGCGAGTCAAGATTTGGGATGTGGCTACTGGAAAGTGTGAGAGTACAATGGAGCATCACTCAGACAAGGTTCAAGCAGTTGCTTGGAATCATCGTGAACCAGAAATTCTTCTTAGTGGTTCATTTGATCATACTGTGGTCCTGAGGGATGGAAGAATGCCATCCCATCCTGGTTATAAGTGGTCAGTCACAGCTGATGTCGAGAGCTTGGCCTGGGATCCACACACTGAGCACTATTTTGTGGTGAGTCTCGAGAATGGTACTGTCAAGTGTTTTGATGTTCGGACCGCAAAGTCTGAATCCACATCTGATCTAAGTTCTACATTTACTCTTCATGCACATGACAAAGCTGTTACCTCAGTATCCTATAACGTCTCAGCACCTAATCTACTTGCTACTGGATTGATGGACAAAACGGTAAAGCTTTGGGATTTATCGAATAACCAACCATCTGTTGTGGCATCTAAAAACTCCAATGCTGGAGCTGTATTTTCTATTTCGTTCTCAGAGGACAACCCCTTTGTGTTGGCTATAGGAGGCTCAGAGGGAAAATTGCAAGTTTGGGACACTTTATCTGAGTCTGCTGTCTCTCGGCGTTATGAAAATTACAACAAGAATAGAACTCGGTCGTGA	1299	0.4357	MDDAGGAVDEVARALDVADALGKADKLDDIALGLKELDMEHYDDEDKGVEVFSSGIGDLYYPSNDLDPYIKDKNDDDDSEELEDMIINPTDSVIVCARTEDDLSLLEVHILEDVGTSEMNMYVHHDIIIPAFPLSTAWLDCLQGREKGNFLAVGSMEPSIEIWDLDVIDAVQPCMVLGGISEKKKKGKKKSIKYKDDSHTDSVLGLAWNKAFRNILASASADKRVKIWDVATGKCESTMEHHSDKVQAVAWNHREPEILLSGSFDHTVVLRDGRMPSHPGYKWSVTADVESLAWDPHTEHYFVVSLENGTVKCFDVRTAKSESTSDLSSTFTLHAHDKAVTSVSYNVSAPNLLATGLMDKTVKLWDLSNNQPSVVASKNSNAGAVFSISFSEDNPFVLAIGGSEGKLQVWDTLSESAVSRRYENYNKNRTRS	432

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Adu03g03075	432	Gene3D	-	36	274	IPR015943	GO:0005515
	Adu03g03075	432	PANTHER	PERIODIC TRYPTOPHAN PROTEIN 1	24	424	IPR044285	GO:0006364
	Adu03g03075	432	ProSiteProfiles	Trp-Asp (WD) repeats profile.	378	420	IPR001680	GO:0005515
	Adu03g03075	432	Coils	Coil	422	432	-	-
	Adu03g03075	432	ProSitePatterns	Trp-Asp (WD) repeats signature.	353	367	IPR019775	-
	Adu03g03075	432	Pfam	WD domain, G-beta repeat	330	366	IPR001680	GO:0005515
	Adu03g03075	432	PRINTS	G protein beta WD-40 repeat signature	216	230	IPR020472	-
	Adu03g03075	432	PRINTS	G protein beta WD-40 repeat signature	353	367	IPR020472	-
	Adu03g03075	432	PRINTS	G protein beta WD-40 repeat signature	398	412	IPR020472	-
	Adu03g03075	432	PANTHER	TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN	24	424	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Adu03g03075	Adu-Chr3	115120852	115125622	Proximal

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Adu03g03075	213	411	U-box Gene Family	AT2G33340	30.288	1.00e-09	58.5

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Adu03g03075	K14791		-	gmx:100807947	650.203

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