Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Adu03g03064 | ATGGAGTTCCTTGACGACGACGACACGAGGCCTAGGTTCCTATTCCAATCTGGATCACAGCCACCGCCTTCATCCGCTGACGACCAATCCTACAACAAACCAACCAAGACACTACTCATTGTCACCGTCTCTGCCTCCGCCATCCTCCTCTTCCTCTCTATCTTCTACATCCAAGCTGAGCCATTCAAGTCCCTCCTCCTCTGGCTCTCCCTCTCCCTCCTCGTTGGACCTTTCGCCCCTCCTTCCCTCACCGCCGGAGATATCCGTGTAGGCCGGGGCTCCATCCTCGAATTCCCCGACCAACAAGCCCTCGCCGAAGACGATGACAACAAGAAGAAATATCAGCGCCGATCCAAATCCCGCAGATCCGACGAAGTCCAATCTGTCGCCGCCGTTGTCTCTCCAGTCGTCAAATCGCCGGAGCGGGAGGCTGAGAAGATCCGAGCCAACGGAAACGGAAACGGAAATGGCGTTGTGTCGGAGAAGGAGTGGAGTGAAGAGGATGTGGAGATTCTGAAGAAGCAGATGACGAAGCATCCCGTCGGGAAGCCAGGGCGGTGGGAGGCGATAGCGGCGGCGTTTGGCGGGAGACACGGAGCGGAGAGCGTGATAAAGAAGTCGAAGGAGTTGGCGGAGAAGAAGGTGGACGATTCGGAGTCGTACGCGCAGTTCCTGAAGAAGAGGAAGCCTGTGGACAAGAGAGTGGTGGAAGAGGCGGCGGAGGAGGAGGAGAAGAACGGTGGTTCTGGTGCCGTTGGTGACGGCACGTGGAGTTCAGGCGAGGACATTGCGCTGCTGAATGCTCTGAAAGCGTTCCCGAAGGAGGCTGCGATGAGATGGGAGAAGGTGGCTGCTGCGGTTCCCGGGAAGTCAAAGGCCGCTTGCATGAAAAGAGTTACTGAATTGAAGAAAGGGTTTCGGAATGCAAAAGCTGCTTCTGCCGATAAGAACATGAAGTTGATCGGATTACATGGAACAGGCTTTCCCACCCAGACAGCTATTCAGTTTATATACATACATCAAGAACGACAGAGTAACATATAA | 1044 | 0.5489 | MEFLDDDDTRPRFLFQSGSQPPPSSADDQSYNKPTKTLLIVTVSASAILLFLSIFYIQAEPFKSLLLWLSLSLLVGPFAPPSLTAGDIRVGRGSILEFPDQQALAEDDDNKKKYQRRSKSRRSDEVQSVAAVVSPVVKSPEREAEKIRANGNGNGNGVVSEKEWSEEDVEILKKQMTKHPVGKPGRWEAIAAAFGGRHGAESVIKKSKELAEKKVDDSESYAQFLKKRKPVDKRVVEEAAEEEEKNGGSGAVGDGTWSSGEDIALLNALKAFPKEAAMRWEKVAAAVPGKSKAACMKRVTELKKGFRNAKAASADKNMKLIGLHGTGFPTQTAIQFIYIHQERQSNI | 347 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Adu03g03064 | 347 | CDD | SANT | 163 | 197 | IPR001005 | - | |
| Adu03g03064 | 347 | CDD | SANT | 256 | 303 | IPR001005 | - | |
| Adu03g03064 | 347 | PANTHER | DNAJ HOMOLOG SUBFAMILY C MEMBER 2 | 1 | 313 | IPR044634 | GO:0006450|GO:0030544|GO:0043022|GO:0051083 | |
| Adu03g03064 | 347 | PANTHER | TRANSCRIPTION FACTOR MAMYB | 1 | 313 | - | - | |
| Adu03g03064 | 347 | Gene3D | - | 249 | 317 | - | - | |
| Adu03g03064 | 347 | ProSiteProfiles | Myb-like domain profile. | 255 | 303 | IPR001005 | - | |
| Adu03g03064 | 347 | MobiDBLite | consensus disorder prediction | 106 | 124 | - | - | |
| Adu03g03064 | 347 | MobiDBLite | consensus disorder prediction | 13 | 31 | - | - | |
| Adu03g03064 | 347 | MobiDBLite | consensus disorder prediction | 1 | 31 | - | - | |
| Adu03g03064 | 347 | MobiDBLite | consensus disorder prediction | 106 | 127 | - | - | |
| Adu03g03064 | 347 | SUPERFAMILY | Homeodomain-like | 253 | 304 | IPR009057 | - | |
| Adu03g03064 | 347 | Gene3D | - | 157 | 217 | - | - | |
| Adu03g03064 | 347 | SMART | sant | 253 | 305 | IPR001005 | - | |
| Adu03g03064 | 347 | SMART | sant | 160 | 213 | IPR001005 | - | |
| Adu03g03064 | 347 | SUPERFAMILY | Homeodomain-like | 158 | 200 | IPR009057 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Adu03g03064 | Adu-Chr3 | 114958643 | 114960486 | Dispersed |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | MYB-related | Adu03g03064 | None | None | None |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Adu03g03064 | - | - | adu:107480279 | 563.148 |