Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g03053 ATGAGTGAACCTGGCAGAAAGCACTCTTCAAGGAGGGATTTGAGAGATGATGCTGAATTTGCAAGTAGCCGGAGTAGGAGCCCTGCATGCGATTTCAGGTGGGATTCAGAAGCCAGTGACAGAAAAAGAATGAGGTCTGGAGGATCAACACGACCATGTAGAGATTTCGCTGTTGGAAACTGCAGAAGAGGCAGCCATTGCCATTTCCTTCATGATGATAATCAAAACTATGATGATGGCTGGGAAAGTAGAAGCAGGCAAGACAGAGCTCTCAGATATTCTGCACCCCATGAGGGTGGGGACTATTCTCTTAGAAGTGGAAGATCTAATGATGCTTGTATTAATTTTGCAAAAGGATGGTGTAGAATGGGAGCATCATGCAAGTATGTACATCATCACAACAATTCTGATGGGTTTCGTGAAATTTCCGTTGCAGAATCAACTAGAGAAAGGGAAATTGATAGGAGGCACATGGAGAGTTCTTATGAGTGGGATGGTGCGCATCGTCCAAATCACAGTGGGGATATTCCTTGCAAATTTTTTGCTTTTGGCAATTGTCGAAACGGTAAAAATTGCAGGTTTTCTCATGATAGTCAAGCATTTCAGAGGCCTAACAGAAGTTTAAGGGATGATAGGACGAGTTATTATGGTGAACATGAGGCATTGGATATACAAAAATTGAATGATTCGATTAGTCCGAATGGAAGGCTAAGGGATGACAGATGTGGTTTCAAAAGCAACATGGCTGATGTAGATGAAGCTTGGGATGGTCCAGAAAAGAATGACTTGGGTGCTGTCGTTGATACAGAAAACCTGGTTGAGGACAACACAAACAGAATTTCAGGTGCCACAGAGCCGAGTTTCACTCATCGGCCAATGAATGATGTATTGGACTGCCGTTTAGATAAGGGCAGAGTGCATGCTCAATCACCGTTTCCAAGTGCGAAGAACGATACCAACTATTGGGAGACACAAAAGGCTGGAGACAACATGCGCAGTACCCAGTCAATAAATACAGTGATTTGGCCAGGTGATGAAAAAATGTCTCCCGATTGGAAGTTTGGTGTGGGATCTTTCTGCGGAACTGAAGAGAAGCATGAGCAGAATAAACAAGAAGTTACTCCAGGACAAAGATTTAATCAGAATGCTCAGGATCTAAATGCTTCAAGCTGTCAGGTTGTTGGTCAAAGTCAAATGCCAGTTTCCGTTGCTGCTTCAAGAGTGGGAATTGTAGAAGGTATGCAGAACCAGGAAATCAATGTGGAGAAAAAGTACACTGCTGAGCCAAACATCATGGAGGCGATTCTATCACAAATTAGTTCAAGAGATCCTTTATCTCAGAACATGGTTAGCAAAGAACGGCTTGCTCAACTAACCAGCATCTCAGCCACTCTGGCACATATCATTGGTTCAGCTAAGCAGCTTCCACAACTTAATGCTACTTCAAATTCTCATGATGCAAGGGATACTCCTTTACTAGGCAAATCTGAAGGGTCTTATTCTAATAATAAGCCAGTTTTTACGTTCGCCAAGTCAGATCCTGCCGTTGGATCACAGAAGCAGTATGATCCAATTTGTGACAGTATTGAAACTAAGGATGCTCATGCAAATGGCGTCCCGCCATACTTTTCCCCAATTGTAAAAATTATAAATGAAGCGGAAGAAATTCCAGCACCATCATCTAAGTCAACAAGACAAAATCTTGATTATTCTCGTAAAACTGCCTTTCCAGAAGGACCACTTGTTAAGTGTGACCACTCTATTCAGTTGCAGCAGCAAGGTGAAAATATTGAGATTAATAAGGAGAAAGATGTAGTGATAGCTGAAGAAAAGCAAAGTTTACAATGTGCTAAAGAAATCACGAAAGAGAATATTCCTATGGAAAACATGGATCAAACTGGTGGAACTGATGAAGCCAAGAAAACAAAGGATGTTAAAGGGGTTCGTGCATTTAAATATTCATTGGTGGAGTTTGTTAAGGAGCTGCTAAAACCAACATGGAAAGAAGGCCAAATCACCAAAGAAGATTATAAATCAATTGTGAAGAAAGTTGCTGATAAAGTAGTTGGCACGGTGCAGCGGGCACATATTCCTCAAACGCAAGAGAAAATTGACCACTACCTATCATTGTCAAAACCAAAGCTTAACAAACTTCTACAGGCATATGTAGAAAAGGCACAGAAGGCATAG 2190 0.4164 MSEPGRKHSSRRDLRDDAEFASSRSRSPACDFRWDSEASDRKRMRSGGSTRPCRDFAVGNCRRGSHCHFLHDDNQNYDDGWESRSRQDRALRYSAPHEGGDYSLRSGRSNDACINFAKGWCRMGASCKYVHHHNNSDGFREISVAESTREREIDRRHMESSYEWDGAHRPNHSGDIPCKFFAFGNCRNGKNCRFSHDSQAFQRPNRSLRDDRTSYYGEHEALDIQKLNDSISPNGRLRDDRCGFKSNMADVDEAWDGPEKNDLGAVVDTENLVEDNTNRISGATEPSFTHRPMNDVLDCRLDKGRVHAQSPFPSAKNDTNYWETQKAGDNMRSTQSINTVIWPGDEKMSPDWKFGVGSFCGTEEKHEQNKQEVTPGQRFNQNAQDLNASSCQVVGQSQMPVSVAASRVGIVEGMQNQEINVEKKYTAEPNIMEAILSQISSRDPLSQNMVSKERLAQLTSISATLAHIIGSAKQLPQLNATSNSHDARDTPLLGKSEGSYSNNKPVFTFAKSDPAVGSQKQYDPICDSIETKDAHANGVPPYFSPIVKIINEAEEIPAPSSKSTRQNLDYSRKTAFPEGPLVKCDHSIQLQQQGENIEINKEKDVVIAEEKQSLQCAKEITKENIPMENMDQTGGTDEAKKTKDVKGVRAFKYSLVEFVKELLKPTWKEGQITKEDYKSIVKKVADKVVGTVQRAHIPQTQEKIDHYLSLSKPKLNKLLQAYVEKAQKA 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g03053 729 ProSiteProfiles Zinc finger C3H1-type profile. 177 199 IPR000571 GO:0046872
Adu03g03053 729 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 50 72 IPR000571 GO:0046872
Adu03g03053 729 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 8 727 - -
Adu03g03053 729 Gene3D - 47 138 - -
Adu03g03053 729 SUPERFAMILY CCCH zinc finger 175 197 IPR036855 GO:0046872
Adu03g03053 729 SMART c3hfinal6 172 198 IPR000571 GO:0046872
Adu03g03053 729 SMART c3hfinal6 108 133 IPR000571 GO:0046872
Adu03g03053 729 SMART c3hfinal6 49 73 IPR000571 GO:0046872
Adu03g03053 729 Pfam RNA-binding, Nab2-type zinc finger 112 131 - -
Adu03g03053 729 Gene3D - 152 206 - -
Adu03g03053 729 MobiDBLite consensus disorder prediction 1 31 - -
Adu03g03053 729 PANTHER ZINC FINGER CCCH DOMAIN PROTEIN-RELATED 8 727 - -
Adu03g03053 729 ProSiteProfiles Zinc finger C3H1-type profile. 47 74 IPR000571 GO:0046872
Adu03g03053 729 MobiDBLite consensus disorder prediction 480 499 - -
Adu03g03053 729 MobiDBLite consensus disorder prediction 1 22 - -
Adu03g03053 729 ProSiteProfiles Zinc finger C3H1-type profile. 107 134 IPR000571 GO:0046872
Adu03g03053 729 Pfam CCCH-type zinc finger 177 197 IPR041367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g03053 Adu-Chr3 114461121 114464691 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Adu03g03053 zf-CCCH 1.5e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g03053 - K22909 gmx:100783856 771.541