Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g03052 ATGATGGATACCACAAACCTGCAGCAGAATAATAATGCTAGTGTCTTCACTGCTGCTACTTGGACAGAAGCTGATCATAATCACATCGTTCACCAAATCCCTAACATCATGGCTTCTGGGGTTTTCCCAAACTACCATCACCTTCTTCAAATTCATCATCATCCCTCAACAACCACTACTGCACTGCCCTCTTCTTCTTCGTCGGGGTTCCTTGGTGACATACTTGGAGTAGTGCACCAAGAACAAGAACAAGATCATGATCACGATCATGAAGATGAAGAGCCAGAAGAGGAGCTTGGAGCCATGAAGGAGATGATGTACAAGATCGCAGCTATGCAGCCCGTGGACATCGATCCCGCCACCATTCGGAAGCCAAAGAGGCGAAACGTTCGCATCAGCGACGACCCTCAGAGCGTAGCGGCGCGCCACCGCAGGGAGAGGATCAGCGAGAAGATTCGGATCCTGCAGAGGCTTGTTCCCGGTGGAACAAAGATGGACACAGCTTCCATGCTGGATGAAGCAATTCGCTATGTTAAGTTCTTGAAGAGACAAATCAGGTTGCTTCAATCCACTACTCCTCATCAACCGCCACAATGCAATTATGTTGGTCTTCCAAATAATCCTAACAGTGCCTTTTCTTTAGGCCCTTCTACTTCTGATTGGCCTTTTGCACCCACCACCACGCCCTCCGCCGTGCCTGCCTCATTCGGATTCAATGCCGGAGGAGGTCATCATGCCCCCTCTAGCTTTAATCATCATGAGGTAATTAATGAATGA 777 0.4878 MMDTTNLQQNNNASVFTAATWTEADHNHIVHQIPNIMASGVFPNYHHLLQIHHHPSTTTTALPSSSSSGFLGDILGVVHQEQEQDHDHDHEDEEPEEELGAMKEMMYKIAAMQPVDIDPATIRKPKRRNVRISDDPQSVAARHRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSTTPHQPPQCNYVGLPNNPNSAFSLGPSTSDWPFAPTTTPSAVPASFGFNAGGGHHAPSSFNHHEVINE 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g03052 258 Pfam Helix-loop-helix DNA-binding domain 142 181 IPR011598 GO:0046983
Adu03g03052 258 CDD bHLH_AtIND_like 133 190 - -
Adu03g03052 258 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 137 199 IPR036638 GO:0046983
Adu03g03052 258 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 20 240 IPR045843 GO:0003700|GO:0006355
Adu03g03052 258 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 20 240 - -
Adu03g03052 258 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 132 181 IPR011598 GO:0046983
Adu03g03052 258 Gene3D - 135 196 IPR036638 GO:0046983
Adu03g03052 258 SMART finulus 138 187 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g03052 Adu-Chr3 114408816 114409592 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g03052 99 197 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G09750 89.899 1.85e-49 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Adu03g03052 HLH 1.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g03052 - - aprc:113856609 284.263
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu03g03052 03 114408816 114409592 Adu03g03052 03 114408816 114409592 ECH
Adu03g03052 03 114408816 114409592 Adu10g01763 10 81561798 81562541 PCT