Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g03008 ATGGAAAGGAGCGTTAGCAGAACCCACAAGAAGCCGATGAGCCTTAACGACTCTCATTATCGCTTCCTTCAAGACCTCTCCGCTCATCCTAAATCCAAACCCTCTCCCTCTCCCTCTGCCTCCGAAGAGAAGGAGCACGATGAAACTCCCATTCAATCAGATGATCATACTATTCCCCGATTCTCTGCTATCACCGACTTCGATTCTCCTATCGGGCCTGACTCGGAGGAGAAACCCTCTTCCATCGAGGTCAAACCTCCGCGCTCTTCTCCGAAGGAAATTTCACAGGCTTCATTGGGGACAACGCGTAATGACGAGAAGAAGACCAAGCTGAAGTTGCAGGGTCGTCGCCGCCTCTGCAAAGTTGCGACTTCAGACGATTGTGATAAGGAGGCAGCGGTTGATGAATCCAGGTTCGATGAGCTCATCGAGCTTGATTCGCCACTTCCGGCACCCAAAAACGTGATCCAGATTGACGATAGTGTCGGTAAGAACGACATTAGGGATATTTTGAATGAGTTGAATTCAAAGTTCGAGTTGCTGTCAGTTGAGAGGAAGCGAGAGACGAAGCAGGTGAAACCGATTGAGGGTTCTTCAGCTTTGTTTAGAGGAAAGGAAACTTATGAGGATGATGAGGTCGTAGAGTTCGGGAGTGCGGGGTCTTCATTCTCTCCACAGCAGGATCCGAGTAACGACCAGTCACAGGGTGCCAAGTATGCTGTTGGTGATGCCGGAATTGAGTATGTGGAAGATGATGACTCTCCTGCCAAGTTTGCTGGTGGTGATGGTGGAATTGAGTATGTGCAAGATGATGACTCAGATGATTCTGTTGAAGAATTGGTTAATTTTGAGCCAAAGGGTGATGGCTCCATCACTCTGCCAGGCCCCAAATATACTTTTAAGTTGCCCTCTAAAATTGCGAAAATGTTGTATCCACATCAGAGGGATGGATTGAAGTGGCTCTGGTCTTTGCATTGTTTGGGTAAAGGTGGAATCTTGGGAGATGACATGGGTTTGGGGAAAACAATGCAGATGTGTGGCTATCTTGCTGGACTCTTTCATTCTCGAATTATTAAAAGGGCATTGATTGTGGCCCCAAAAACCTTGTTGCCCCATTGGATCAAGGAATTATCCGCTGTTGGTCTTTCTGAAAAGACGAGAGAATATTTTGGAACTAATACAAAAGCCAGAGAATATGAACTTCAGTACATACTTCAGGATAAAGGTGTTCTTCTAACAACATATGATATTGTCCGCAACAATTCTAAGTCCTTGCGAGGGAGTTATCATTTTGATGATGAGGACAATGAAGATGGTGCCACATGGGATTATATGATCCTTGATGAGGGGCACCTTATAAAGAACCCAAGCACACAGAGGGCTAAAAGTTTGCTTGAGATACCATGTAGCCACCGCATTATCATTAGTGGCACACCATTGCAAAATAATCTTAAGGAGTTGTGGGCTTTGTTCAATTTCTGCTGCCCTGAGTTACTTGGTGACAATAAATGGTTCAAAGAAAAATTTGAAGTACCCATACTTCGTGGAAATGACAAACATGCTACGGACAGAGATAAGCGTGTAGGATCTGCTATAGCAAAGGACTTAAGAGATCGTATTCAACCTTACTTTTTGCGACGTTTGAAGAGTGAGGTTTTCAATCAAGATGATGACAAAACAACTGCAAAACTTTCCAAGAAAGAAGAGATTATTGTTTGGCTTCGATTGACTAGTATTCAGCGACATCTATATGAAGCATTTTTGAAGAGTGAGATTGTTCTCTCAGCATTTGATGGCTCGCCACTTGCTGCCCTTACGATTTTGAAGAAAATATGTGATCATCCACTTCTGTTGACAAAGCGGGCAGCTGAGGATGTATTGGAAGGGATGGACTCAATGCTAAAGCCAGAAGAAGTTAATGTTGCTGAAAAATTGGCGATGCACATAGCAGATGTTACAGACACAGATAGGTTCAAAAATGAGCATGGTCATGATGTATCATGCAAAATTTCTTTCATCATGTCATTATTGGATAATCTGATCCCAGAAGGGCATAGTGTCCTTATCTTTTCTCAGACTCGCAAAATGCTTAACATTATTCAGGAATGCCTAGCATCCAAAGGTTATGACTTTCTACGGATTGATGGAACAACAAAAGCCTGTGACAGATTAAGGATTGTTAATGAATTCCAAGCAGGTGCAAGTGCCCCTATATTTCTGTTGACATCTCAAGTAGGTGGTTTAGGACTCACACTCACAAGAGCAGATCGTGTTATTGTTGTTGATCCTGCTTGGAACCCAAGTACGGATAACCAAAGTGTCGACCGTGCATATCGTATTGGTCAAAAGAAAGATGTTCTTGTTTATAGACTGATGACATGTGGAACTGTTGAAGAAAAGATCTATAGGAAGCAGGTATATAAAGGAGGATTATTCAGAACTGCTACTGAACAAAAAGAACAAACTCGCTACTTTAGTCAGCAGGATCTTAGGGAGCTTTTCAGCCTTCCAAGAGAGGGGTTTGATGTATCTGTTACCCAACGACAATTGGATGAGGAGCATGATGGTCAACATACAGTGAATGACACTTTTAAAGCACATATAGAATTCCTGAGTAGTCAAGGTATAGCAGGAGTTAGCCACCATAGTTTACTCTTTTCCAAAACAGGACCAGTTCAAGCTGCTCCTGAAGATGATGATATGACGAGGAGGAATCAAGGGACTAGATATATTGGTACTTCAGTATCGTCTTCTTCAAATGACCGAATGGCTGATGGAGCTGAGTTTGCCTTTAAACCCAAGGATTTAGATCGAAGCAAAAAGGGTTTTTCCCCTAGCAGCGATGGTAAAATGACAGAGTCGGAAATCAAAGATAGAATTAAGCGGCTCTCTCAAACTCTGTCAAATACGGCGATGATTTCTAGATTACCGGATAAGGGGGCGAAACTACAGAAAAGGTTGACGGAGCTGAATTCGGAGCTTGCCAGATTAGGGATGGAAGAAAGAACTGGTGCTGATCTGGATGATTTCACCAGTGAGTTTCAAAGAGTGTTGAATGTATAG 3063 0.4306 MERSVSRTHKKPMSLNDSHYRFLQDLSAHPKSKPSPSPSASEEKEHDETPIQSDDHTIPRFSAITDFDSPIGPDSEEKPSSIEVKPPRSSPKEISQASLGTTRNDEKKTKLKLQGRRRLCKVATSDDCDKEAAVDESRFDELIELDSPLPAPKNVIQIDDSVGKNDIRDILNELNSKFELLSVERKRETKQVKPIEGSSALFRGKETYEDDEVVEFGSAGSSFSPQQDPSNDQSQGAKYAVGDAGIEYVEDDDSPAKFAGGDGGIEYVQDDDSDDSVEELVNFEPKGDGSITLPGPKYTFKLPSKIAKMLYPHQRDGLKWLWSLHCLGKGGILGDDMGLGKTMQMCGYLAGLFHSRIIKRALIVAPKTLLPHWIKELSAVGLSEKTREYFGTNTKAREYELQYILQDKGVLLTTYDIVRNNSKSLRGSYHFDDEDNEDGATWDYMILDEGHLIKNPSTQRAKSLLEIPCSHRIIISGTPLQNNLKELWALFNFCCPELLGDNKWFKEKFEVPILRGNDKHATDRDKRVGSAIAKDLRDRIQPYFLRRLKSEVFNQDDDKTTAKLSKKEEIIVWLRLTSIQRHLYEAFLKSEIVLSAFDGSPLAALTILKKICDHPLLLTKRAAEDVLEGMDSMLKPEEVNVAEKLAMHIADVTDTDRFKNEHGHDVSCKISFIMSLLDNLIPEGHSVLIFSQTRKMLNIIQECLASKGYDFLRIDGTTKACDRLRIVNEFQAGASAPIFLLTSQVGGLGLTLTRADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVLVYRLMTCGTVEEKIYRKQVYKGGLFRTATEQKEQTRYFSQQDLRELFSLPREGFDVSVTQRQLDEEHDGQHTVNDTFKAHIEFLSSQGIAGVSHHSLLFSKTGPVQAAPEDDDMTRRNQGTRYIGTSVSSSSNDRMADGAEFAFKPKDLDRSKKGFSPSSDGKMTESEIKDRIKRLSQTLSNTAMISRLPDKGAKLQKRLTELNSELARLGMEERTGADLDDFTSEFQRVLNV 1020
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g03008 1020 Pfam SNF2-related domain 325 617 IPR000330 GO:0005524|GO:0140658
Adu03g03008 1020 PANTHER OS04G0692700 PROTEIN 289 902 - -
Adu03g03008 1020 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 672 831 IPR001650 -
Adu03g03008 1020 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 297 547 IPR027417 -
Adu03g03008 1020 SMART helicmild6 698 781 IPR001650 -
Adu03g03008 1020 Gene3D - 295 568 IPR038718 -
Adu03g03008 1020 MobiDBLite consensus disorder prediction 1 16 - -
Adu03g03008 1020 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 322 497 IPR014001 -
Adu03g03008 1020 Coils Coil 171 191 - -
Adu03g03008 1020 SMART ultradead3 305 508 IPR014001 -
Adu03g03008 1020 Coils Coil 980 1000 - -
Adu03g03008 1020 MobiDBLite consensus disorder prediction 38 54 - -
Adu03g03008 1020 MobiDBLite consensus disorder prediction 1 110 - -
Adu03g03008 1020 MobiDBLite consensus disorder prediction 936 955 - -
Adu03g03008 1020 MobiDBLite consensus disorder prediction 218 238 - -
Adu03g03008 1020 MobiDBLite consensus disorder prediction 219 237 - -
Adu03g03008 1020 Pfam Helicase conserved C-terminal domain 669 781 IPR001650 -
Adu03g03008 1020 Gene3D - 569 866 IPR027417 -
Adu03g03008 1020 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 563 865 IPR027417 -
Adu03g03008 1020 PANTHER SNF2/RAD54 FAMILY MEMBER 289 902 - -
Adu03g03008 1020 CDD SF2_C_SNF 664 792 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g03008 Adu-Chr3 113175329 113181643 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g03008 310 835 RAD5 or RAD16-like Gene Family AT1G02670 24.653 8.74e-36 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Adu03g03008 SNF2_N 2.4e-49 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g03008 K20093 - gmx:100779283 1415.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu03g03008 03 113175329 113181643 Adu03g03008 03 113175329 113181643 ECH