Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g02939 ATGGTCCTGGTGGTTTACCACTTTCAATCACCAAGTAACTCACACAAGGCTTTAGCTAAACAAATTATTTTCACTTTAATAAGTGGAGGGGATGAGATTGAAGGAGATGGAAGCCAACTTGACATGGAAGTGCTCGACTTCAACAGGGTCAAGGCTTCGGTGGGCAAAGGAAGGGAAGGAAAAAGCACCAAACACTTTGCAACTGAGAAACAAAGAAGAGAGCAACTGAATGGCAAATACAAAATCCTGAGGAGTGTTATCCCAAGCCTCATATTTCAGTTTTTTAATAAATTTTCTCGACTCTTTCTACCAATCTAA 318 0.4025 MVLVVYHFQSPSNSHKALAKQIIFTLISGGDEIEGDGSQLDMEVLDFNRVKASVGKGREGKSTKHFATEKQRREQLNGKYKILRSVIPSLIFQFFNKFSRLFLPI 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g02939 105 Pfam Helix-loop-helix DNA-binding domain 62 88 IPR011598 GO:0046983
Adu03g02939 105 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 60 105 IPR011598 GO:0046983
Adu03g02939 105 Gene3D - 55 102 IPR036638 GO:0046983
Adu03g02939 105 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 58 90 IPR036638 GO:0046983
Adu03g02939 105 PANTHER TRANSCRIPTION FACTOR BHLH91 30 89 IPR045895 GO:0006355|GO:0048658
Adu03g02939 105 PANTHER TRANSCRIPTION FACTOR BHLH91 30 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g02939 Adu-Chr3 111260680 111262216 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g02939 34 89 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31210 37.500 6.54e-06 41.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Adu03g02939 HLH 8e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g02939 - - gmx:100801349 110.923