Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g02923 ATGCCTTCTCCAATGGTGGATCAGAGGGGAGTTTCTGCTTCATCTCACTTTTTTGATGACATTTCTTTTCGTTCTGAGAGGGATGCTGGAATACGGAAGTTCAAATCCATTCATGATCAATATCCACAAGGAAAAAATGGAATGATAGCATCCCCTGGAAGCAATTTGAATTCTTCATCTGTACTGGAAAGAAGTGCAAAATCTGGTTTGCCAATGTCATGCACCAGTCTATCTATTGAAAATGTGGAACAGCTAAAATTTGGTGGTGAAGGCATTTTTGATGCGCTGATGGTTTCCAAGGAATCATCACATTATCATCACAGATCAAGGTCTGATTTATGTATGCGCTCCGGACCGAACTCACCTGGTGTAATCGGGGACAAGTTTGTTTCCAGTGCAGCCACATGTGAAAGTACTTTATTCTCGAGCTCATTGTCTGATATGTTTTGCCAAAAGTTGAGGTTGTTCGGGAAAGATGCTTTATCTGATCAGCCCGATATTATTGATTCTGTTCCCGAGGAAGAGCCTTATAAATCTCTTGAAGAAATAGAGGCTGAAACTATAGGGAATCTCCTTCCTGATGAAGATGATCTGTTTTCTGGTGTCAATGATGAGTCAAGATATAACAATACTAATGCCAGAAAAAATGATGACTTGGAGGATTTTGACTTGTTTAGCAGTGGGGGAGGCATGGAGCTGGAAAGAGATGAACATCTGAATGCAGGATTAAGAACTAGTGCTCTGGAGGGAGATTCAGGTTTTGTTGGAGGTCCTAAAGGAAAATTTCCTTTTGTCACACAACCTTCTAGAACACTCTTTGTTCGGAACATTAATAGCAACGTAGACGACTCTGAGCTAAAGGCTCTCTTTGAGCAATATGGAGATATTAGAACCATGTATACAGCTTGTAAACATCGTGGTTTTGTCATGATTTCTTATTTTGACCTAAGAGCTGCACAAAGTGCAACGCAAGAACTTCAAAATTGGCCACTGAGGTTAAGGAAACTTGATATACATTATTCAATTCCAAAGGTCAATGCTTCTGAGAAGGATATTGGCCATGGTACGCTGATGCTATCTGGTCTTGATTCATCTATTTCAAATGATGAACTCAAACAGATTTTTGGATTTTATGGAGATATTAAAGAAATTTTTGAATCTCCTGAAATGAAACAGCACAAATTTATAGAGTTTTATGATGTACGAGCTGCAGAAGCTGCTCTTCGTGCATTGAACAGGGTTGACATTGCTGGGAAGCAGATCAAGATTGAACCAGGACATCCTAGTTTGATGCAGCAGTCTCATAAGGGGCAAGATGAACCAGATCTTGGTCAGAATATTATTGACAACTTAGCACTGAGACAGAAGACAACTGTGTCTCCTGGAGTGATTGGGTCTGGCTTGGAAAATGGTTACAATCAGGGATTTCAATCTGGAATGGCGCAACCTTTAAACACATATACTGATAATGCATTTGGACATATAAATTCTAGCATTCACAACACAGTGAGAGGGTCATCAGCTTCAAATGTTTCTGGCGTTTCTGAGTCCAATATATTTGTTGACGCAATAAAATTTGCTTCTAGTCCGAGATTTCATCCTCATTCCTTACCCGAGTATCATGATACTTTAGCTAATGGTAGTCCTTATAACTTTTCAAGCACCATTAGCAACATGACTAGCAGTGTCAATACTGGAGTGACCGAAGCCTCTGACAGCAGGCACAATCAGGGAATGAGCTCAACTGGGAACTTAGCAGAATTTAATGCAGGAGGAAATGGGATCCGGTCACATCATGGACTTTATCAGATGTGGAACAGCTCCAATTTGCATCAGCAGTCTTCGTCAGGTACCATGCTGTGGCAGAAAAGACCATCATTTGTTAATCTTCCACAGATGCCAAGCTTTGCCAGAACACCACCTCATATGTTGAGGTCACAACACATGGACCACAATGTTGCATCAGCACCAGTGTCACCTTGGGGAAGGCAACATTCGCACCTAGCAGAATCCCCTGATGCTTCTGGTTTTGTGGGAAGTGGAGGTTTTCAGGGTTCCTGGCAATTGCTTTCTCCAGAATTTTCTCCTCGCTTGTTTCCTCATGCAAGTCCTAAAGGCACTGAACTGCCATCCAATGCTGGGCAGAGTTCTCCTAAGCATCATGGTTTCCCTGGAAGACATTCTATGAATTCAACGTCAAAATTTGATTCTGCCAATGAACGAATGAGAAGCCTTTATCACCGTAGGAGTGAAACAAACAATGCTGATAAAAAACAATTTGAGCTTGACCTAGGTCGCATAATGCAGGGGGAAGACACCCGAACAACACTTATGATAAAAAATATTCCCAACAAGTATACCTCAAAGATGCTTCTTGCTGCTATTGATGAGCGTTGTAGGGGAACTTACGATTTTCTGTATTTGCCAATTGACTTCAAGAATAAATGTAATGTTGGTTATGCATTTATAAATATGATCGATGCTGCTCAAATTATTCCTTTCCACCAGGCTTTTAATGGGAAAAAATGGGAGAAGTTCAATAGTGAAAAGGTAGCCTCACTTGCATATGCCCGAATTCAAGGAAAAGCTTCTCTCATTGCCCATTTCCAGAACTCAAGCCTGATGAATGAAGATAAACGTTGCCGCCCTATTCTCTTCCACACTGATGGTCCAAATGCTGGTGATCCAGAGCCTTTTCCCATGGGTACCAATATTAGAGTGAGACCTGGAAAATCTCGCACTGCTGGTAATGACGAAAGTCGCAACCAACCAAGTCCAAGAATTTTGATAAATGTATACTCGTTGCCTGTCATCGTTTCTCTTCCCCTCGCCGTCGTCTCTCTCTGTCGCTGTCGAGCCCTATCTGTCGCGGTCGAGCCCTCTCTCTGTCGCCGTCGTGCCCTCTCTGTGTCGCCGTCGAGCCCTCTCTTTGTGTCGCCGTTGAGCTCTCGATCTCTCTGTGTCGCCGTCGAGCTCAACGACCCTTCCTCCGCCTCGTCGCCGTCCGTCGCAGTTAGGGGATCCTCTCTTCATTCCGTTGGCGTCCTCCAAAGAAGAACCCCTGTTGGCTCTCAGTCTTCGTTCTCTACTGTCGACGTCATCTGCTCGCAATCGTCCTTCGAAGGTCAGTGCTTACTGCTCGCAGTCTTCATTCTTTTCTACGCCGTCCGTCATCCTGCTCGTTACCTGGTCTCCGTCTCCGCTGCGCTTCTGCCCCTCGGCTCAGACGGCTCAGAACGAAGGCAAAGGCTTCATTTTTTTTAA 3264 0.4354 MPSPMVDQRGVSASSHFFDDISFRSERDAGIRKFKSIHDQYPQGKNGMIASPGSNLNSSSVLERSAKSGLPMSCTSLSIENVEQLKFGGEGIFDALMVSKESSHYHHRSRSDLCMRSGPNSPGVIGDKFVSSAATCESTLFSSSLSDMFCQKLRLFGKDALSDQPDIIDSVPEEEPYKSLEEIEAETIGNLLPDEDDLFSGVNDESRYNNTNARKNDDLEDFDLFSSGGGMELERDEHLNAGLRTSALEGDSGFVGGPKGKFPFVTQPSRTLFVRNINSNVDDSELKALFEQYGDIRTMYTACKHRGFVMISYFDLRAAQSATQELQNWPLRLRKLDIHYSIPKVNASEKDIGHGTLMLSGLDSSISNDELKQIFGFYGDIKEIFESPEMKQHKFIEFYDVRAAEAALRALNRVDIAGKQIKIEPGHPSLMQQSHKGQDEPDLGQNIIDNLALRQKTTVSPGVIGSGLENGYNQGFQSGMAQPLNTYTDNAFGHINSSIHNTVRGSSASNVSGVSESNIFVDAIKFASSPRFHPHSLPEYHDTLANGSPYNFSSTISNMTSSVNTGVTEASDSRHNQGMSSTGNLAEFNAGGNGIRSHHGLYQMWNSSNLHQQSSSGTMLWQKRPSFVNLPQMPSFARTPPHMLRSQHMDHNVASAPVSPWGRQHSHLAESPDASGFVGSGGFQGSWQLLSPEFSPRLFPHASPKGTELPSNAGQSSPKHHGFPGRHSMNSTSKFDSANERMRSLYHRRSETNNADKKQFELDLGRIMQGEDTRTTLMIKNIPNKYTSKMLLAAIDERCRGTYDFLYLPIDFKNKCNVGYAFINMIDAAQIIPFHQAFNGKKWEKFNSEKVASLAYARIQGKASLIAHFQNSSLMNEDKRCRPILFHTDGPNAGDPEPFPMGTNIRVRPGKSRTAGNDESRNQPSPRILINVYSLPVIVSLPLAVVSLCRCRALSVAVEPSLCRRRALSVSPSSPLFVSPLSSRSLCVAVELNDPSSASSPSVAVRGSSLHSVGVLQRRTPVGSQSSFSTVDVICSQSSFEGQCLLLAVFILFYAVRHPARYLVSVSAALLPLGSDGSERRQRLHFF 1087
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g02923 1087 Gene3D - 353 445 IPR012677 -
Adu03g02923 1087 SUPERFAMILY RNA-binding domain, RBD 268 426 IPR035979 GO:0003676
Adu03g02923 1087 SUPERFAMILY RNA-binding domain, RBD 776 861 IPR035979 GO:0003676
Adu03g02923 1087 CDD RRM1_MEI2_like 269 344 IPR034453 -
Adu03g02923 1087 Pfam RNA recognition motif 2 774 870 IPR007201 -
Adu03g02923 1087 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 270 343 IPR000504 GO:0003723
Adu03g02923 1087 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 272 332 IPR000504 GO:0003723
Adu03g02923 1087 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 357 422 IPR000504 GO:0003723
Adu03g02923 1087 CDD RRM3_MEI2_like 777 862 IPR034454 -
Adu03g02923 1087 Gene3D - 264 352 IPR012677 -
Adu03g02923 1087 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 355 428 IPR000504 GO:0003723
Adu03g02923 1087 MobiDBLite consensus disorder prediction 697 737 - -
Adu03g02923 1087 PANTHER RNA RECOGNITION MOTIF 2, NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 2 931 - -
Adu03g02923 1087 MobiDBLite consensus disorder prediction 654 675 - -
Adu03g02923 1087 PANTHER RNA RECOGNITION MOTIF-CONTAINING 2 931 - -
Adu03g02923 1087 SMART rrm1_1 271 339 IPR000504 GO:0003723
Adu03g02923 1087 SMART rrm1_1 776 852 IPR000504 GO:0003723
Adu03g02923 1087 SMART rrm1_1 356 424 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g02923 Adu-Chr3 110683549 110692071 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g02923 268 438 Eukaryotic Initiation Factors Gene Family AT1G71770 24.615 1.24e-06 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g02923 - - gmx:106798747 1322.76