Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g02843 ATGGATTGGAATTTGAAAGCACCACCGTCTTGGGATTTGACAGAAGTGGATGAGGCAACCTTACCAAACATAGAAACAGTGGATGGCTCAACCAGATTTGGTGTTTACAGAACAAAAGAAGGGGAATTCTCTGTTGACTTGAAACTTGGCCAGGTTGGGAATTCTGCAACCGAACCAGTGTTGGTGACTAATTCAAATAAGTCCAACAAAGATGCTGTTGCTGCTGGTGTTGGTGTTGGTGTTGGTGTTGGGGTGTCCAACTCCAAAATGGTAATGCAATCACCTTCCTCAGGGTCATCAAAGAGAGCTAGAGCCATTAACAATGGGACACAGACAGTGTCATGCCTCGTTGATGGGTGCAATTCAGATCTCAGCACTTGCAGAGACTATCACAGGCGCCATAAGGTCTGCGAACTCCATTCCAAGACTGCTCAGGTCACAATTGCTGGCCACAAACAAAGGTTCTGCCAACAGTGTAGCAGGTTTCATTCACTGGAGGAGTTTGATGAAGGAAAGAGAAGCTGCAGAAAACGCTTAGATGGACACAACCGAAGGAGGAGAAAGCCACAACCAGAACCAATCACAAGAGGTGGTAGTTTTTTGTCCAGTTTCCAAGGCAGCCAGTTGCTACCCTTCTCAGGTTCGCATGTGTTCCCCTCATCTGGCGTGGTGAATGCTGGGTGGAGTGCAGGACTTGTTACATCCTGCGGAGATGTCAGGCTCCACAGCCACAGCAGCCAGCAACAGCAACAGATGCACATGGTTGATAAACAAGACCTGTTCCTTGGATCCTCACCAACACCCTACAATAACAACAAAGAAGGGAAGCAACAACTTGCATTCTTACAAGTTGATAACCATCACCACCATCATGCTGGTGCTGCTTCTTCCATGTGCCTGAGGAACATGTTCTGTGATAACACCCTAACAAGCTCGGTTCATGACTCTTCCTGTGCTCTCTCTCTTCTGTCATCACCACAGACAACACACAATCCTGGGAATGGATTGAACCAACTGGTGCCGCAGCCTCACACTCATCATACTCATCACTCTTCCCTGATGCAACAATCCTTAGGCCTCAGCCTCCACGATAGCAGCAGCATGGAGTCGGTGGACCCGGTTATGGGCCACAGTGAGACTGAACATTGTTCCTCAATGTATAATATGGATTCTCATGGATCCCATGGGAGTGATCCCCCTCAACTATTCCCCTTTCAGTGGGAATAA 1227 0.4792 MDWNLKAPPSWDLTEVDEATLPNIETVDGSTRFGVYRTKEGEFSVDLKLGQVGNSATEPVLVTNSNKSNKDAVAAGVGVGVGVGVSNSKMVMQSPSSGSSKRARAINNGTQTVSCLVDGCNSDLSTCRDYHRRHKVCELHSKTAQVTIAGHKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPEPITRGGSFLSSFQGSQLLPFSGSHVFPSSGVVNAGWSAGLVTSCGDVRLHSHSSQQQQQMHMVDKQDLFLGSSPTPYNNNKEGKQQLAFLQVDNHHHHHAGAASSMCLRNMFCDNTLTSSVHDSSCALSLLSSPQTTHNPGNGLNQLVPQPHTHHTHHSSLMQQSLGLSLHDSSSMESVDPVMGHSETEHCSSMYNMDSHGSHGSDPPQLFPFQWE 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g02843 408 MobiDBLite consensus disorder prediction 179 199 - -
Adu03g02843 408 SUPERFAMILY SBT domain 113 194 IPR036893 GO:0003677|GO:0005634
Adu03g02843 408 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 13A ISOFORM X1 11 408 - -
Adu03g02843 408 ProSiteProfiles Zinc finger SBP-type profile. 112 189 IPR004333 GO:0003677
Adu03g02843 408 Pfam SBP domain 115 188 IPR004333 GO:0003677
Adu03g02843 408 Gene3D - 106 176 IPR036893 GO:0003677|GO:0005634
Adu03g02843 408 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 11 408 IPR044817 GO:0003677
Adu03g02843 408 MobiDBLite consensus disorder prediction 326 357 - -
Adu03g02843 408 MobiDBLite consensus disorder prediction 388 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g02843 Adu-Chr3 107322490 107326040 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g02843 1 408 SBP-box Gene Family AT5G50670 40.515 1.97e-74 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Adu03g02843 SBP 5.3e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g02843 - - ahf:112790946 769.615
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu03g02843 03 107322490 107326040 Adu03g02843 03 107322490 107326040 ECH