Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g02640 ATGGCTTCATCAGTATTAGTGGCCCGATTATGTTTACTGGTTGCCTTTGTATTCCATAATCTTCAAATCACAAGAAGCAAACAGGTTTGCGATGTGAAGTCATGCGGCGAAATCGAAGATATTCAGTTCCCATTCGGTTTGAAAGAAGCCAATCAAGAGCCTCAGTGCAGCTATTACCCTGACCCCAGTTTCCATCTCTTGTGCAAGCGCAGCAACCTCACTCAAACAATCCTCACTCTCCCCAAAACAGAGGACTTGGTAATCAAGAGCATCGATTACGAGGAACAAACCATCCAAGTCAACGATCCCAAAGGTTGTCTCCCAAAACGTTTCTTGCACAATAACTGGGACCTTTCGGATTCACCATTCACACTCGACATCGCACGCTACAAATATTTCAATCTGACCTTCCTCAGTTGCCCCTCAAACTGGACCAAATCCACGGGGTCACCTAGAATCGCATGCCTCAGTGACAACACTGGAAACTCGGTCATAGTCTTAGGGCTGCGTCCTATTGACATATCATCAACGTGTGACGTGATGTCCACGGCTCTTGTGCCGCTTCCGATGGTGGATATGCCTCAGTGGCCATTCTGGCCTGATCTCAACCACGATATTGGCTTGGCTTGGACCCAACCAAGGTGCTCCGAATGTGCGGTTAGTGGCCAACGTTGTGGCTTCGTCAACGATAAAACTTCTCGAGTTGGATGCTTTTCTACTCCCACCAAAAACCAAGGTCTTAGCAGCAGTGCCAAATATGGCTTAACCTTAGGAGTGGGAGTTCCCGGGCTCTTATGTTTAATTGGGCTTTCATGCTTCATTTGCGGTAAGGTCAAGTACCCAAAGACTCTTATCGGTGAGAGCGGGCGCTTGTTGAAGCCCACTGATAATACCTGCTCAATATGCCTCTGTGAATATGAGCCTAAAGATACTTTGAGGACCATACCTGAGTGCAACCATTATTTCCATGCTGAGTGCATAGACGAGTGGCTCAGAATGAATGGAACCTGCCCCTTGTGCAGGAACACACCGGGGGCATTATCTAGAGTTAGCCCTTCTTTCTCTTCTTTGTCTCATCACACTTCATCAATGTCCTCTACGCCATAG 1107 0.4743 MASSVLVARLCLLVAFVFHNLQITRSKQVCDVKSCGEIEDIQFPFGLKEANQEPQCSYYPDPSFHLLCKRSNLTQTILTLPKTEDLVIKSIDYEEQTIQVNDPKGCLPKRFLHNNWDLSDSPFTLDIARYKYFNLTFLSCPSNWTKSTGSPRIACLSDNTGNSVIVLGLRPIDISSTCDVMSTALVPLPMVDMPQWPFWPDLNHDIGLAWTQPRCSECAVSGQRCGFVNDKTSRVGCFSTPTKNQGLSSSAKYGLTLGVGVPGLLCLIGLSCFICGKVKYPKTLIGESGRLLKPTDNTCSICLCEYEPKDTLRTIPECNHYFHAECIDEWLRMNGTCPLCRNTPGALSRVSPSFSSLSHHTSSMSSTP 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g02640 368 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 279 367 - -
Adu03g02640 368 Pfam Ring finger domain 297 341 IPR001841 -
Adu03g02640 368 Pfam Wall-associated receptor kinase galacturonan-binding 30 102 IPR025287 GO:0030247
Adu03g02640 368 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 278 - -
Adu03g02640 368 SMART ring_2 299 340 IPR001841 -
Adu03g02640 368 MobiDBLite consensus disorder prediction 349 368 - -
Adu03g02640 368 ProSiteProfiles Zinc finger RING-type profile. 299 341 IPR001841 -
Adu03g02640 368 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 278 - -
Adu03g02640 368 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 279 367 - -
Adu03g02640 368 CDD RING-H2_PA-TM-RING 298 341 - -
Adu03g02640 368 SUPERFAMILY RING/U-box 293 344 - -
Adu03g02640 368 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 285 345 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g02640 Adu-Chr3 93300294 93304189 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g02640 28 345 C3H Transcription Factor Family AT2G46495 35.928 4.36e-48 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g02640 - - adu:107479323 573.933