Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g02478 ATGGCTTTTCGCGACCACCAACCACACGAAATTACTTTTCAGTCCTTCACGGACGAGCAACATTTAAATCACAACAGAGACATGCAGAGGATGCTAACTCTCTCCGGCGCCGGCGATGGAGGACCGGCTCCGACGTGGCTGAACAACGTCCGGCAGCAGAATTTCCTGCACCTTCAGCCGAACGCGTCGTCGGCACGAAACGACGACGTTCGAGACATGATGGCGGCGGAAGCTACGTCAGCGGAGAAGAGCATGGATCATCGGAAGAACTACCTCCAGCAGCAGCGGACGATGACGGAAAGTAACAACTGCGACTCAGAGGATGCGGCGGAGTACAAGGCGGACATCCTAGGACACCCGCTATACGAGCAGCTGCTGTCGGCGCACGTGTCGTGTCTGAGGATCGCGACGCCCGTTGACCAGCTACCGAGAATCGACGCTCAGTTGCAGCAGTCGCAGCGCGTGGTGGAGAAGTACTCTGCGCATGGGAATAATGGTGCTCTCAATGAGAAGGAGCTTGATAACTTCATGACACATTACGTTCTATTGCTTTGCGCTTTTAAAGAACAATTGCAACAACATGTCCGTGTCCATGCCATGGAAGCAGTGATGGCTTGTTGGGAGCTGGAGCAGTCTCTACAAAGCTTGACGGGTGTATCTCCCGGAGAAGGGACAGGTACGACGATGTCGGACGACGAAGACGATCAGGCGGCAGAGAGCAATGGCAACTTGTACGAAGGATGTTTAGATGGCGCTGATAGTCTCAGCTTTGGCCCTCTTGTTCCAACTGAAACTGAAAGATCTCTAATGGAGCGTGTTCGCCAGGAGCTAAAGCACGAGCTAAAACAGGGTTACAAGGATAAAATTGTTGACATAAGAGAAGAAATTCTGCGAAAGAGAAGAGCCGGGAAGCTTCCTGGGGATACCACCTCTCTCTTAAAAGCTTGGTGGCAATCTCATTCTAAATGGCCCTATCCAACGGAAGAAGACAAGGCGAGGCTGGTGCAGGAAACAGGCTTGCAATTAAAGCAGATAAATAACTGGTTCATAAATCAGAGGAAAAGGAATTGGCATACTAATCCTTCGTCGTCTACTGGCGGCAAAAGCAAGCGCAAGAATACTAATAATAATAGCGGTGGTGCAGGTGAAACAAATAACCAGAGCTTCATGTGA 1173 0.5081 MAFRDHQPHEITFQSFTDEQHLNHNRDMQRMLTLSGAGDGGPAPTWLNNVRQQNFLHLQPNASSARNDDVRDMMAAEATSAEKSMDHRKNYLQQQRTMTESNNCDSEDAAEYKADILGHPLYEQLLSAHVSCLRIATPVDQLPRIDAQLQQSQRVVEKYSAHGNNGALNEKELDNFMTHYVLLLCAFKEQLQQHVRVHAMEAVMACWELEQSLQSLTGVSPGEGTGTTMSDDEDDQAAESNGNLYEGCLDGADSLSFGPLVPTETERSLMERVRQELKHELKQGYKDKIVDIREEILRKRRAGKLPGDTTSLLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHTNPSSSTGGKSKRKNTNNNSGGAGETNNQSFM 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g02478 390 SMART KNOX2_2 163 218 IPR005541 GO:0003677|GO:0005634
Adu03g02478 390 SMART ELK_2 276 297 IPR005539 GO:0003677
Adu03g02478 390 SMART HOX_1 298 363 IPR001356 GO:0003677
Adu03g02478 390 ProSiteProfiles ELK domain profile. 276 296 IPR005539 GO:0003677
Adu03g02478 390 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 34 378 - -
Adu03g02478 390 Pfam KNOX1 domain 112 153 IPR005540 GO:0003677|GO:0005634
Adu03g02478 390 SMART KNOX1_2 110 154 IPR005540 GO:0003677|GO:0005634
Adu03g02478 390 MobiDBLite consensus disorder prediction 217 242 - -
Adu03g02478 390 Gene3D - 295 371 - -
Adu03g02478 390 Pfam KNOX2 domain 170 217 IPR005541 GO:0003677|GO:0005634
Adu03g02478 390 CDD homeodomain 299 360 IPR001356 GO:0003677
Adu03g02478 390 MobiDBLite consensus disorder prediction 353 390 - -
Adu03g02478 390 ProSiteProfiles 'Homeobox' domain profile. 296 359 IPR001356 GO:0003677
Adu03g02478 390 SUPERFAMILY Homeodomain-like 298 361 IPR009057 -
Adu03g02478 390 Pfam Homeobox KN domain 316 355 IPR008422 GO:0003677|GO:0006355
Adu03g02478 390 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 34 378 - -
Adu03g02478 390 Pfam ELK domain 276 297 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g02478 Adu-Chr3 74304124 74315402 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g02478 110 379 Homeobox Transcription Factor Family AT5G11060 81.387 2.43e-160 454
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Adu03g02478 KNOX2 4.7e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g02478 - - gmx:100816347 594.734