Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g02393 ATGGTGTATAAATTCCACGAGGACGATCACGGGGAGGTTGTTTCGGAGATTAGGAGGTTGGATTTGGAGTCTTATTTGGGCCTGCACTACCCTGCCACTGATATCCCTCAAGCCTCAAGATTCTTGTTCAAGCAAAATCGCGTTCGGATGATTTGTGATTGTAATGCTAAGCCGGTTAAGGTAACTCAGAACCAAGAGTTGAGTCAACCACTTTGCTTGGTGAACTCAACTCTGAGGGCGCCACATGGTTGTCACACGCAGTACATGGCTAACATGGGCTCCATTGCTTCTCTGGTTATGTCAATTGTGGTAAATACCAAAGATTCCATGAAGCTATGGGGTTTGCTAGTGTGCCATCACACTGCGCCGCGCTATGTGCCTTTTCCGGTTCGCTACGCTTGTGAATTTCTTATGCAGGCTTTTGGAGTGCAGCTTTACATGGAGATTCAGTTAGCAGCGCAAATGGCAGAGAAAAGGATTCTCAAGACACAAACTTTGCTGTGTGACATGCTCCTTCGCGACGCGCCGTTTGGGATTGTTACTCAGTCTCCTAATATCAAGGATCTTGTCAAGTGTGATGGGGCTGCCCTGTATTATGATGGGAACTGTTGGTTGTTAGGCACAACGCCGTCGGAATCACAGGTAAAAGACATTGCTGAATGGTTGCTTAGTACTCACGGTGACTCGACCGGTTTGAGTACAGACAGTTTGGCTGATGCTGGTTATCCTGGGGCTGTTTTACTTGGGGATGCAGTGTGTGGCATGGCAATGGCGCGAATCAGTTCGAGGCATTTCTTGTTCTGGTTCCGATCTCACACTGCTAAGGAAGTTAAGTGGGGAGGGGCCAAACACCATCCTGAGGATAAGGATGATGGAAGGAAAATGAATCCAAGATCATCATTCAAAGCATTTCTTGAAGTTGTTAAGAGCAAAAGTTCGCCTTGGGAGGCTTCCGAAATCAATGCTATTCACTCATTGCAACTTATAATTAGAGATTCATTTCACAATTCAGAGAATAGTGGTATTAAGGCTATGAACTACATACAGAGAAGTGATGCTTCAAGTGGTGGGATTGATGAGCTAAGTTCAGTAGCATTTGAAATGGTGAGGTTAATTGAGACGGCAACTGTGCCGATTTTCGGGGTTGACACAGGTGGCCTAATCAATGGTTGGAATGTGAAAATTGCGGAATTGACAGGTTTGCTGGCAAATGAAGCTATTGGAAAATCACTAGTGAATGAAGTAGCGCATGCAGACTCGCGCAACAATCTTGAAAATATTCAAAGTAAAGCCCTGCAAGGCTTAGAAGACAAGAATTTTGAGTTGAAATTGAAACATTTTGGGAATCAACAAGAAAATGGAGTTGTATATCTCATAGTGAATGCTTGCACAAGTAGAGATTACACAAATGCTGTTGTTGGGGTATGCTTTGTAGGCCAAGATATCACTTGTGAGAAAGTTGTTCTGGACAAATTTGTCAAGTTGGAAGGTGATTACAAAGCTATCATACAGAGTCTCAATCCGCTTATTCCGCCGATATTTGCTTCTGACGAGAGCGCCTGCTGCTCCGAATGGAATGCAGCCATGGAAAGGATAACTGGCTGGAAGAGAGACGAAGTCATAGGAAAACTTCTTCCCGGGGAAATCTTTGGAAGCTTTGTTAGACTGAAAGGTCAAGATACACTGACTAACTTCATGATCTTGCTTTACCGGGGAATTAGCGGACAAGAATTCGAGAAGTTTCCCTTCGGATTTTTTGATAGGAACGGAGAGTTTATAGAGGCTTACATCACTGCTAACAAGAGGATCGATACGAGTGGGAACATGATTGGCTGTTTCTGCTTCTTGCAGATTGTATCTCGCGATCCGAATCAGCCTTCGGATGGACAAAATCTTCCTCAAGGGAGGAAGAGTATATCTGAGTCTAAGGAGTTTGCTTATATATTACAAGAGATGATGAATCCTTTAAACGGTATTCGGTTTACGCATAAGCTTCTGGAGAAAACAGCTGTCTCAGAAAGCCAGAAACAGTTTCTTGACACTAGTGCTGCTTGTGAAAGACAGATAATGGCAATTATTGAGGAAACATACATAGGAAGTATCAATGAAGGCAGCAGTGTGCAGCTAAACATGGAGGAATTTCTTCTTGGGGGTATTCTAGATGCCATTGTGAGTCAAGTGATGCTGTTGGTGAGAGGAAAAAGCTTGCAGCTGTTTCATGAAATTCCTGATGAAATGAAAACTCTTGCTCTGTATGGTGATCAAATAAAGCTTCAAGTGGTCTTATCTGACATTCTGCTTAATGTAGTCAACCATACACCATCTCCAAATGGCTGGGTTGAAATCAAGATTTCACCTGGTTTGAAGATAATTCAGGACGGCCATGAGTTTATCCATTTGAAGTTCAGAATGAGCCATTCCGGTCAAGGTCTTCCTTCTAACACACTTCAGGATATGTTTGAAGAAGGGAATCAATGGACTACACAAGAAGGTTTAGGGCTATATATGTCAAGAAAAATGCTTAGTAGGATGAATGGTCATGTTCACTATGCGAGAGAACAAAATAAGTGCTACTTCCTCATTGATCTTGAACTTAGAACAAGAAAAGAAAGGCAAAGGAATTTGCAAGCGGAGACAAGCATGTTGAGTTAA 2652 0.4291 MVYKFHEDDHGEVVSEIRRLDLESYLGLHYPATDIPQASRFLFKQNRVRMICDCNAKPVKVTQNQELSQPLCLVNSTLRAPHGCHTQYMANMGSIASLVMSIVVNTKDSMKLWGLLVCHHTAPRYVPFPVRYACEFLMQAFGVQLYMEIQLAAQMAEKRILKTQTLLCDMLLRDAPFGIVTQSPNIKDLVKCDGAALYYDGNCWLLGTTPSESQVKDIAEWLLSTHGDSTGLSTDSLADAGYPGAVLLGDAVCGMAMARISSRHFLFWFRSHTAKEVKWGGAKHHPEDKDDGRKMNPRSSFKAFLEVVKSKSSPWEASEINAIHSLQLIIRDSFHNSENSGIKAMNYIQRSDASSGGIDELSSVAFEMVRLIETATVPIFGVDTGGLINGWNVKIAELTGLLANEAIGKSLVNEVAHADSRNNLENIQSKALQGLEDKNFELKLKHFGNQQENGVVYLIVNACTSRDYTNAVVGVCFVGQDITCEKVVLDKFVKLEGDYKAIIQSLNPLIPPIFASDESACCSEWNAAMERITGWKRDEVIGKLLPGEIFGSFVRLKGQDTLTNFMILLYRGISGQEFEKFPFGFFDRNGEFIEAYITANKRIDTSGNMIGCFCFLQIVSRDPNQPSDGQNLPQGRKSISESKEFAYILQEMMNPLNGIRFTHKLLEKTAVSESQKQFLDTSAACERQIMAIIEETYIGSINEGSSVQLNMEEFLLGGILDAIVSQVMLLVRGKSLQLFHEIPDEMKTLALYGDQIKLQVVLSDILLNVVNHTPSPNGWVEIKISPGLKIIQDGHEFIHLKFRMSHSGQGLPSNTLQDMFEEGNQWTTQEGLGLYMSRKMLSRMNGHVHYAREQNKCYFLIDLELRTRKERQRNLQAETSMLS 883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g02393 883 CDD HATPase_Phy-like 752 865 IPR044767 -
Adu03g02393 883 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 707 865 IPR036890 -
Adu03g02393 883 ProSiteProfiles Histidine kinase domain profile. 647 867 IPR005467 -
Adu03g02393 883 SUPERFAMILY PYP-like sensor domain (PAS domain) 512 614 IPR035965 -
Adu03g02393 883 CDD PAS 509 617 IPR000014 -
Adu03g02393 883 Pfam GAF domain 23 149 IPR003018 GO:0005515
Adu03g02393 883 Pfam Phytochrome region 162 337 IPR013515 GO:0006355|GO:0009584
Adu03g02393 883 Gene3D PAS domain 511 623 - -
Adu03g02393 883 SMART HisKA_10 640 704 IPR003661 GO:0000155|GO:0007165
Adu03g02393 883 TIGRFAM sensory_box: PAS domain S-box protein 371 486 IPR000014 -
Adu03g02393 883 Pfam PAS fold 498 617 IPR013767 GO:0006355
Adu03g02393 883 Pfam PAS fold 367 482 IPR013767 GO:0006355
Adu03g02393 883 SMART pas_2 497 567 IPR000014 -
Adu03g02393 883 SMART pas_2 366 433 IPR000014 -
Adu03g02393 883 Gene3D PAS domain 370 485 - -
Adu03g02393 883 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 1 139 IPR016132 -
Adu03g02393 883 CDD HisKA 640 695 IPR003661 GO:0000155|GO:0007165
Adu03g02393 883 ProSiteProfiles PAS repeat profile. 498 576 IPR000014 -
Adu03g02393 883 SUPERFAMILY GAF domain-like 1 145 - -
Adu03g02393 883 ProSiteProfiles PAS repeat profile. 364 435 IPR000014 -
Adu03g02393 883 Gene3D - 686 859 IPR036890 -
Adu03g02393 883 SUPERFAMILY PYP-like sensor domain (PAS domain) 370 478 IPR035965 -
Adu03g02393 883 SMART HKATPase_4 753 867 IPR003594 -
Adu03g02393 883 Pfam His Kinase A (phospho-acceptor) domain 642 696 IPR003661 GO:0000155|GO:0007165
Adu03g02393 883 ProSitePatterns Phytochrome chromophore attachment site signature. 79 88 IPR013516 -
Adu03g02393 883 Gene3D - 153 337 IPR043150 -
Adu03g02393 883 PANTHER PHYTOCHROME 1 868 - -
Adu03g02393 883 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 753 863 IPR003594 -
Adu03g02393 883 SUPERFAMILY GAF domain-like 157 334 - -
Adu03g02393 883 Gene3D - 1 152 IPR029016 -
Adu03g02393 883 PANTHER TWO-COMPONENT HISTIDINE KINASE 1 868 - -
Adu03g02393 883 CDD PAS 375 482 IPR000014 -
Adu03g02393 883 PRINTS Phytochrome signature 367 383 IPR001294 GO:0006355|GO:0009584
Adu03g02393 883 PRINTS Phytochrome signature 460 477 IPR001294 GO:0006355|GO:0009584
Adu03g02393 883 PRINTS Phytochrome signature 264 283 IPR001294 GO:0006355|GO:0009584
Adu03g02393 883 PRINTS Phytochrome signature 179 199 IPR001294 GO:0006355|GO:0009584
Adu03g02393 883 PRINTS Phytochrome signature 79 100 IPR001294 GO:0006355|GO:0009584
Adu03g02393 883 PRINTS Phytochrome signature 386 401 IPR001294 GO:0006355|GO:0009584
Adu03g02393 883 PRINTS Phytochrome signature 297 315 IPR001294 GO:0006355|GO:0009584
Adu03g02393 883 PRINTS Phytochrome signature 480 500 IPR001294 GO:0006355|GO:0009584
Adu03g02393 883 SMART gaf_1 1 159 IPR003018 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g02393 Adu-Chr3 60046935 60051625 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g02393 1 867 Histidine Kinase Gene Family AT4G18130 62.385 0.0 1149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g02393 K12123 - gmx:100808192 1494.18